View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_high_20 (Length: 436)
Name: NF15401_high_20
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 7953821 - 7954215
Alignment:
| Q |
19 |
aagtaatacatcctttgatggttagatttgtgctcgttatattgaatattggtattaaatttcttgtgtctacagaaatttttcccatccgaatttgggc |
118 |
Q |
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|||||||| ||||||| ||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7953821 |
aagtaatagctcctttgctggttagatttcggcttgttatattgaatgttggtactaaatttcttgtgtctacagaaatttttcccatccgaatttgggc |
7953920 |
T |
|
| Q |
119 |
tagacgtggaccgtcacgaggcagttgagccagttagacaagtttttgaagaaaaagcgagtatccgaagagtaattgaagctaaaggagttccttacac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7953921 |
tagacgtggaccgtcacgaggcagttgagccagttagacaagtttttgaagaaaaagcgagtatccgaagagtaattgaagctgaaggagttccttacac |
7954020 |
T |
|
| Q |
219 |
ttacctttgttgccacgcctttaccggttacttcttacgtaacttggctcaactcgacgtcactgatcctcctcgcgacaaagttgtcattcttggagat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
7954021 |
ttacctttgttgccacgcctttaccggttacttcttacgtaacttggctcaactcgacgtcactgatcctcctcgggataaagttgtcattcttggagat |
7954120 |
T |
|
| Q |
319 |
ggaaatgtgaaaggtaacagacttagtcacaaaacagttttagtactagtattctactaaacatacatcattcaattgtttcaacatatgcctta |
413 |
Q |
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| T |
7954121 |
ggaaatgtgaaaggtagcaaacttattcacaaaacagttttagtactagtattctactaaacatacatcattcaattgtttcaacatttgcctta |
7954215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 7966701 - 7967095
Alignment:
| Q |
19 |
aagtaatacatcctttgatggttagatttgtgctcgttatattgaatattggtattaaatttcttgtgtctacagaaatttttcccatccgaatttgggc |
118 |
Q |
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|||||||| ||||||| ||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7966701 |
aagtaatagctcctttgctggttagatttcggcttgttatattgaatgttggtactaaatttcttgtgtctacagaaatttttcccatccgaatttgggc |
7966800 |
T |
|
| Q |
119 |
tagacgtggaccgtcacgaggcagttgagccagttagacaagtttttgaagaaaaagcgagtatccgaagagtaattgaagctaaaggagttccttacac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7966801 |
tagacgtggaccgtcacgaggcagttgagccagttagacaagtttttgaagaaaaagcgagtatccgaagagtaattgaagctgaaggagttccttacac |
7966900 |
T |
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| Q |
219 |
ttacctttgttgccacgcctttaccggttacttcttacgtaacttggctcaactcgacgtcactgatcctcctcgcgacaaagttgtcattcttggagat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
7966901 |
ttacctttgttgccacgcctttaccggttacttcttacgtaacttggctcaactcgacgtcactgatcctcctcgggataaagttgtcattcttggagat |
7967000 |
T |
|
| Q |
319 |
ggaaatgtgaaaggtaacagacttagtcacaaaacagttttagtactagtattctactaaacatacatcattcaattgtttcaacatatgcctta |
413 |
Q |
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|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7967001 |
ggaaatgtgaaaggtagcaaacttattcacaaaacagttttagtactagtattctactaaacatacatcattcaattgtttcaacatttgcctta |
7967095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 7942772 - 7942824
Alignment:
| Q |
285 |
tcctcctcgcgacaaagttgtcattcttggagatggaaatgtgaaaggtaaca |
337 |
Q |
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|||||| ||||| ||||| ||||||||||||||||||||||| |||||||||| |
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| T |
7942772 |
tcctccccgcgataaagtggtcattcttggagatggaaatgtcaaaggtaaca |
7942824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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