View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_high_21 (Length: 403)
Name: NF15401_high_21
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 81 - 308
Target Start/End: Complemental strand, 487317 - 487088
Alignment:
| Q |
81 |
tcatgaattattgttgcaggcataaaagttcaactaaatttattcaaacggacttgtatatataaaagtaaaatagatttcttttcaacttgtgttaaaa |
180 |
Q |
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| T |
487317 |
tcatgaattattgttgaaggcataaaagttcaactaaatttattcaaacggacttgtatatataaaagtaaaatagatttcttttcaacttgcgttaaaa |
487218 |
T |
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| Q |
181 |
ctaatttttgcaggagaccttaaatattagttatgttaatgtcattgatttttgtacattggttaag--nnnnnnnttaacagtttaataactatacaca |
278 |
Q |
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| T |
487217 |
ctaatttttgcaggagaccttaaatattagttatgttaatgtcattgatttttgtacattggttaagaaaaaaaaatgaacagtttaataactatacaca |
487118 |
T |
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| Q |
279 |
acaaacgatatatgaacatataaatatgac |
308 |
Q |
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| T |
487117 |
acaaacgatatatgaacatataaatatgac |
487088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 487051 - 487001
Alignment:
| Q |
336 |
tgtgtggttgtgaaattaaaatggaaggacttacatggatgacatcaacct |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
487051 |
tgtgtggttgtgaaattaaaatggaaggacttacatggatgacatcaacct |
487001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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