View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_high_23 (Length: 372)
Name: NF15401_high_23
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_high_23 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 262163 - 261802
Alignment:
| Q |
17 |
acccactgcatcaaccacctcctgaatcctcaaacttgatccatcatcatccaacggtgagatttacggtgtgtttggtttgaatttgttgcttccacag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
262163 |
acccactgcatcaaccacctcctgaatcctcaaactcgacccatcatcatccaacggtgagatttacggtgtgcttggtttgaatttgttgcttccacaa |
262064 |
T |
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| Q |
117 |
atccacaaacccacaaattcctcaattttgcaccagcgccggtgaaggtaacatcgccggcgaaattcctcaatttttcaccggtgctggtgaaggcaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
262063 |
atccacaaacccacaaattcctcaattttgcaccagcgccggtgaaggtaacatcg-cggcgaaattcctcaattttgcaccggtgctggtgaaggcaac |
261965 |
T |
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| Q |
217 |
atcgccggcgactttcacgctcaccttcc-------attttcgatttgattattttggggtttttgatttgggaaaaaatgatgaataagatattgtatc |
309 |
Q |
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||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |
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| T |
261964 |
atcgccggcgactttcatgctcaccttccatttccgatttccgatttgattattttggggtttttgatttgggaaaatatgatgaagaagatactgtatc |
261865 |
T |
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| Q |
310 |
aacacattaaaggcactgttaatctgctatcaccgccgccgttgatgggttattctccgtcgt |
372 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
261864 |
aacacattaaaggtactgctaatctgctatcaccgccgccgttgatgggttattctccgtcgt |
261802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 2829261 - 2828914
Alignment:
| Q |
17 |
acccactgcatcaaccacctcctgaatcctcaaacttgatccatcatcatccaacggtgagatttacggtgtgtttggtttgaatttgttgcttccacag |
116 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2829261 |
acccactgcatcaaccacctcatgaatcctcaaactcgatccatcatcatccaacggtgagatttacggtgtgcttggtttgaatttgttgcttccacaa |
2829162 |
T |
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| Q |
117 |
atccacaaacccacaaattcctcaattttgcaccagcgccggtgaaggtaacatcgccggcgaaattcctcaatttttcaccggtgctggtgaaggcaac |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2829161 |
atccacaaa--------ttcctcaattttgcaccagcgccggtgaaggtaatatcgccggcgaaattcctcaattttgcaccggtgctggtgaaggcaac |
2829070 |
T |
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| Q |
217 |
atcgccggcgactttcacgctcaccttccattttcgatttgattattttggggtttttgatttgggaaaaaatgatgaataagatattgtatcaacacat |
316 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||| |
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| T |
2829069 |
atcgccggcgactttcacgctcaccttccatttccgatttgattattttggggtttttgatttaggaaaaaatgatgaagaagatactatatcaacacat |
2828970 |
T |
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| Q |
317 |
taaaggcactgttaatctgctatcaccgccgccgttgatgggttattctccgtcgt |
372 |
Q |
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|||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2828969 |
taaaggtactgctaatctgctatcaccgtcgccgttgatgggttattctccgtcgt |
2828914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 54591298 - 54590936
Alignment:
| Q |
17 |
acccactgcatcaaccacctcctgaatcctcaaacttgatccatcatcatccaacggtgagatttacggtgtgtttggtttgaatttgttgcttccacag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
54591298 |
acccactgcatcaaccacctcctgaatcctcaaactcgacccatcatcatccaacggtgagatttacagtgtgcttggtttgaatttgttgcttccacaa |
54591199 |
T |
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| Q |
117 |
atccacaaacccacaaattcctcaattttgcaccagcgccggtgaaggtaacatcgccggcgaaattcctcaatttttcaccggtgctggtgaaggcaac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
54591198 |
atccacaaacccacaaattcctcaattttgcaccagcgccgacgaaggtaacatcgtcggcgaaattcctcaattttgcaccggtgctgatgaaggcaac |
54591099 |
T |
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| Q |
217 |
atcgccggcgactttcacgctcaccttcc-------attttcgatttgattattttggggtttttgatttgggaaaaaatgatgaataagatattgtatc |
309 |
Q |
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||||||| ||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
54591098 |
atcgccgacgactttcatgctcaccttccatttccgatttccgatttgattattttggggtttttgatttgggaaaaaatgatgaagaagatactgtatc |
54590999 |
T |
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| Q |
310 |
aacacattaaaggcactgttaatctgctatcaccgccgccgttgatgggttattctccgtcgt |
372 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54590998 |
aacacattaaaggtactgctaatctgctatcaccgccgccgttgatgggttattctccgtcgt |
54590936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 1328534 - 1328572
Alignment:
| Q |
84 |
ggtgtgtttggtttgaatttgttgcttccacagatccac |
122 |
Q |
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||||||||||||||||||| |||||||||||| |||||| |
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| T |
1328534 |
ggtgtgtttggtttgaattcgttgcttccacaaatccac |
1328572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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