View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_high_27 (Length: 343)
Name: NF15401_high_27
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 33511986 - 33512307
Alignment:
| Q |
1 |
catagtcaaattatttagtaaaacaaaattaaaatactaattatattccaagannnnnnnnnggaccaaaataataactctaagatgataactagtgatg |
100 |
Q |
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| T |
33511986 |
catagtcaaattatttagtaaaacaaaattaaaatactaattatattccaagatttttttttggaccaaaataataa--------------ctagtgatg |
33512071 |
T |
|
| Q |
101 |
tacatttctccacaactaatatatttagattaatcaagtgattggacttaaataattaataaactctagatgtaaaagaatcgtttgaatatacccgaat |
200 |
Q |
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| T |
33512072 |
tacatttttccacaactaatctacttagattaatcaaatgattggacttaaataattaataaactctagatgtaaaagaatcgtttgaatatacccgaat |
33512171 |
T |
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| Q |
201 |
tcaaaatctaaacagaacaaatctttgatcatattattttactctctttactaatcttttgatcgaactccaaaataattatcaagtctcattatctttt |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| | |
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| T |
33512172 |
tcaaaatctaaacagaacaaatatttgatcatattattttactctctttattaatctctcgatcgaactccaaaataattatcaagtctcattatcttat |
33512271 |
T |
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| Q |
301 |
tataaaataaataaaaacatatggtactagaataat |
336 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
33512272 |
tataaaataaataaaaacatatggtactagattaat |
33512307 |
T |
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