View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_high_33 (Length: 297)
Name: NF15401_high_33
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 26562816 - 26562516
Alignment:
| Q |
1 |
ttgttgttcttgttaatgactccagcgtcgttcactataatatctggaggacctccatttttctccataacaatgcacgccatctcttca--------ac |
92 |
Q |
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| T |
26562816 |
ttgttgttcttgttaatgactccagcgtcgttcactataatatttggaggacctccatttttctccataacaatgcacgccatctcttcatctcttcaac |
26562717 |
T |
|
| Q |
93 |
cctgctattgaacttaaaatcaatattgaggaatagatgatgttgttgttgggaagttgagattgaaggaagtcgagcttatcttgatcacgtgaacatc |
192 |
Q |
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| T |
26562716 |
cctgttcttgaacttaaaatcaatattgaggaataaat-atgttgttgttgggaagttgagattgaaggaagtcgagcttatcttgatcacctgaacatc |
26562618 |
T |
|
| Q |
193 |
caataatggtgtggtcgtgataagccaattcaatcgcaagagcccttccaaggcctttgctaacaccagttatcatcactgttcgatttcctttgctact |
292 |
Q |
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| T |
26562617 |
caataatggtgtggtcgtgataagccaattcaattgcaagagcccttccgaggcctttgctaacaccagttatcatcactgttcgatttcctttgctcct |
26562518 |
T |
|
| Q |
293 |
cc |
294 |
Q |
| |
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|| |
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| T |
26562517 |
cc |
26562516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 26560798 - 26561086
Alignment:
| Q |
1 |
ttgttgttcttgttaatgactccagcgtcgttcactataatatctggaggacctccatttttctccataacaatgcacgccatctcttcaaccctgctat |
100 |
Q |
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|||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| |
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| T |
26560798 |
ttgttgttcttgttaacgactccggcgccgttcactataatatctgaaggacctccatttttctccataaaaatgcacgccatctcttcaactctgttat |
26560897 |
T |
|
| Q |
101 |
tgaacttaaaatcaatattgaggaatagatgat-gttgttgttgggaagttgagattgaaggaagtcgagcttatcttgatcacgtgaacatccaataat |
199 |
Q |
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|| || ||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |
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| T |
26560898 |
tgcacctaacatcaatattgaggaatagatgatggttgttattgggaagttgagattgaaggaagtcgagtttatcctgatcacatgaacatccaataat |
26560997 |
T |
|
| Q |
200 |
ggtgtggtcgtgataagcc---aattcaatcgcaagagcccttccaaggcctttgctaacaccagttatcatcactgttcgatttcctt |
285 |
Q |
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||||||| | |||||||| ||||||||| ||||| ||||||| |||||||||||||| |||| | |||||| |||||||||||| |
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| T |
26560998 |
ggtgtggctgcgataagccaataattcaatcacaagaacccttccgaggcctttgctaacgttagttttaatcactattcgatttcctt |
26561086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 283
Target Start/End: Original strand, 24890261 - 24890543
Alignment:
| Q |
5 |
tgttcttgttaatgactccagcgtcgttcactataatatctggaggacctccatttttctccataacaatgcacgccatctcttcaaccctgctattgaa |
104 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || |||| | |
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| T |
24890261 |
tgttcttgttaatgacgccagcgccgttcactataatatctggaggacctccttttttctccataacaatgtgtgccatctcttcaacgttgtaattgca |
24890360 |
T |
|
| Q |
105 |
cttaaaatcaatattgaggaatagatgatg-ttgttgttgggaagttgagattgaaggaagtcgagcttat---cttgatcacgtgaacatccaataatg |
200 |
Q |
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| ||| ||||| ||| |||||||||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| |||||||| |||||| |
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| T |
24890361 |
cctaacatcaacgctgatgaatagatgatgattggtgctgggaagttgagattgaaggaagtcgagcttattgtcatgatcacgagaacatccgataatg |
24890460 |
T |
|
| Q |
201 |
gtgtggtcgtgataagccaattcaatcgcaagagcccttccaaggcctttgctaacaccagttatcatcactgttcgatttcc |
283 |
Q |
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|||||| || ||| |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
24890461 |
gtgtggccgcgattagccaattcaattgcaagagcccttccgaggcccttgctaacaccagttatcatcactgtttgatttcc |
24890543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 267
Target Start/End: Complemental strand, 56436658 - 56436542
Alignment:
| Q |
151 |
gagattgaaggaagtcgagcttatcttgatcacgtgaacatccaataatggtgtggtcgtgataagccaattcaatcgcaagagcccttccaaggccttt |
250 |
Q |
| |
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|||||||||| | || |||||||| ||| |||| ||||| || ||||||||||| | ||| ||||||||||| ||||||||||| |||| ||||| |
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| T |
56436658 |
gagattgaagagaatcaagcttatcctgagcacgagaacaacctataatggtgtgacctcgattcgccaattcaatagcaagagccctaccaattccttt |
56436559 |
T |
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| Q |
251 |
gctaacaccagttatca |
267 |
Q |
| |
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|||||||||||| |||| |
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| T |
56436558 |
gctaacaccagtaatca |
56436542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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