View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_high_37 (Length: 285)
Name: NF15401_high_37
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 39580316 - 39580580
Alignment:
| Q |
1 |
cctgaggtaatgatcaatattcttttgcacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataaagagcg |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
39580316 |
cctgaggtaatgatcaatattcttttccacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttggcacttttataaagagcg |
39580415 |
T |
|
| Q |
101 |
tctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttatgtggat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39580416 |
tctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtttaatatcacctccaaagaaaccattcttagcgttatgtggat |
39580515 |
T |
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| Q |
201 |
tagtgatgtaactgtcatctggtagccactttcttgataagctatcgttttcccctgtgatggct |
265 |
Q |
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| T |
39580516 |
tagtgatgtaactgtcatctggtaaccactttcttgataagctattgttttcccctgtgatggct |
39580580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 39543932 - 39544147
Alignment:
| Q |
9 |
aatgatcaatattcttttgcacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataaagagcgtctggacc |
108 |
Q |
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| T |
39543932 |
aatgatcaatactcttttcaacaggaacactccaacttatgtttaaacctttagaaccgcttttgctctctttggcagtttcataaacagcgtccggagc |
39544031 |
T |
|
| Q |
109 |
aatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttatgtggattagtgatg |
208 |
Q |
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| T |
39544032 |
aatatatatatttgaatttggaccttcatatgtattatttgcagtgcgtttaatttcatctgcaaaggaaccattcttagcgttttgtggattagttata |
39544131 |
T |
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| Q |
209 |
taactgtcatctggta |
224 |
Q |
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|||||||||||||||| |
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| T |
39544132 |
taactgtcatctggta |
39544147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 39510885 - 39511121
Alignment:
| Q |
1 |
cctgaggtaatgatcaatattcttttgcacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataaagagcg |
100 |
Q |
| |
|
||||||| ||||||| | | | ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| |||| | ||||||| | |
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| T |
39510885 |
cctgaggaaatgatctacagttttttgcacaggaacactccaacttatgtttaaaccttttgaaccgtttgcactctcttggccagttttataaacaata |
39510984 |
T |
|
| Q |
101 |
tctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttatgtggat |
200 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||| ||||| | || |||||||| |||||| ||||| |||| || || ||||||| |
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| T |
39510985 |
tctggaccaatatatatacttgaatttggaccatcagattcatcatttgcagcgtgtttaatatca---ccaaaggaaccaatcttcgcattttgtggat |
39511081 |
T |
|
| Q |
201 |
tagtgatgtaactgtcatctggtagccactttcttgataa |
240 |
Q |
| |
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|||| ||||| ||||||||| ||| ||| | ||||||||| |
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| T |
39511082 |
tagttatgtatctgtcatctcgtaaccattctcttgataa |
39511121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 39524636 - 39524866
Alignment:
| Q |
9 |
aatgatcaatattcttttgcacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataaagagcgtctggacc |
108 |
Q |
| |
|
||||||| |||||||| | ||||||||||||||||||||||||||||||| |||||||||| |||| ||||| || | ||||||| | |||||||| |
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| T |
39524636 |
aatgatctatattcttctccacaggaacactccaacttatgtttaaaccgattgaaccattaacactcactttggcagttttataaacaatatctggacc |
39524735 |
T |
|
| Q |
109 |
aatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttatgtggattagtgatg |
208 |
Q |
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| T |
39524736 |
tatgtatttatttgaatttgaatcaacagattcatcatttgcagtgcgtttaatatcaccttcaaaggaaccattcttagcgttttggggatcagttata |
39524835 |
T |
|
| Q |
209 |
taactgtcatctggtagccactttcttgata |
239 |
Q |
| |
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|| ||||||||||||| ||| | |||||||| |
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| T |
39524836 |
tatctgtcatctggtaaccattctcttgata |
39524866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 39575841 - 39575993
Alignment:
| Q |
72 |
tactctctttgccactattataaagagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctcc |
171 |
Q |
| |
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|||||||||||||| | ||||||| | |||||| |||||| | ||||||||||||||||||||| |||| |||||||||| ||||||||| | |
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| T |
39575841 |
tactctctttgccagttttataaacaatatctggagcaatatattgatttgaatttggaccatcagacgtatcatttgcagtgcgtggaatatcaccgtc |
39575940 |
T |
|
| Q |
172 |
aaagtaaccattcttagcgttatgtggattagtgatgtaactgtcatctggta |
224 |
Q |
| |
|
|||| | | |||||||||||| ||| ||||||| | || ||||||||||||| |
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| T |
39575941 |
aaaggagcaattcttagcgttttgtagattagttacatatctgtcatctggta |
39575993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 39521227 - 39521348
Alignment:
| Q |
100 |
gtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttatgtgga |
199 |
Q |
| |
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||||||| |||||| | |||||||||||||||||||||| |||| |||||||||| ||||| | | ||||| | | |||||||||||| |||||| |
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| T |
39521227 |
gtctggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaatatgaacgtcaaaggagcgattcttagcgttttgtgga |
39521326 |
T |
|
| Q |
200 |
ttagtgatgtaactgtcatctg |
221 |
Q |
| |
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||||| | ||||||||||||| |
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| T |
39521327 |
ttagttacataactgtcatctg |
39521348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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