View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15401_high_4 (Length: 700)

Name: NF15401_high_4
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15401_high_4
NF15401_high_4
[»] chr3 (2 HSPs)
chr3 (13-682)||(26452896-26453577)
chr3 (1-70)||(26452805-26452874)
[»] chr4 (11 HSPs)
chr4 (93-236)||(23676325-23676469)
chr4 (1-91)||(21538924-21539014)
chr4 (8-75)||(5979786-5979853)
chr4 (1-91)||(4873037-4873127)
chr4 (1-75)||(3703584-3703658)
chr4 (34-76)||(12329026-12329068)
chr4 (35-81)||(21538844-21538890)
chr4 (33-75)||(25812263-25812305)
chr4 (49-86)||(2605367-2605404)
chr4 (11-56)||(48292387-48292432)
chr4 (35-76)||(53860895-53860936)
[»] chr1 (7 HSPs)
chr1 (339-657)||(47680266-47680588)
chr1 (559-661)||(31704706-31704810)
chr1 (8-92)||(49632910-49632995)
chr1 (35-69)||(11985458-11985492)
chr1 (1-91)||(30018564-30018653)
chr1 (34-86)||(30018687-30018740)
chr1 (11-91)||(36724171-36724251)
[»] chr8 (3 HSPs)
chr8 (514-642)||(33948371-33948501)
chr8 (1-91)||(25939281-25939371)
chr8 (34-82)||(9040955-9041003)
[»] scaffold0110 (2 HSPs)
scaffold0110 (13-91)||(11425-11503)
scaffold0110 (13-91)||(19162-19240)
[»] chr5 (12 HSPs)
chr5 (572-661)||(11727316-11727407)
chr5 (34-86)||(10818875-10818927)
chr5 (32-91)||(10818787-10818845)
chr5 (1-91)||(14613533-14613623)
chr5 (27-72)||(4639521-4639566)
chr5 (531-607)||(2210309-2210385)
chr5 (8-91)||(28976687-28976770)
chr5 (1-75)||(6706273-6706347)
chr5 (35-88)||(4192001-4192054)
chr5 (34-86)||(8367019-8367071)
chr5 (330-358)||(11727230-11727258)
chr5 (35-75)||(35924595-35924635)
[»] chr7 (5 HSPs)
chr7 (1-70)||(27866683-27866752)
chr7 (42-86)||(36390712-36390756)
chr7 (1-75)||(48073016-48073090)
chr7 (13-65)||(27747373-27747425)
chr7 (38-70)||(39933632-39933664)
[»] chr6 (4 HSPs)
chr6 (13-69)||(30351451-30351507)
chr6 (35-82)||(13613749-13613796)
chr6 (8-75)||(16396652-16396719)
chr6 (1-91)||(3806174-3806263)
[»] chr2 (3 HSPs)
chr2 (4-86)||(13793669-13793751)
chr2 (34-82)||(37096596-37096644)
chr2 (1-70)||(39994520-39994590)


Alignment Details
Target: chr3 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 13 - 682
Target Start/End: Original strand, 26452896 - 26453577
Alignment:
Q  13 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctcgctttatttttgtcctactgg 112  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||    
T  26452896 gtagttaactattgctggagtatttttggtcattttcatgtgtttctaggaaataatggatgtccaaaaaacaattctcgctttatttttgtcctactgg 26452995  T
Q  113 gctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccctgtgaattgttaaaatttcacatggggtgagaaaaacaagcattg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26452996 gctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccccgtgaattgttaaaatttcacatggggtgagaaaaacaagcattg 26453095  T
Q  213 aatcctataatatggtccaactttaaagnnnnnnnnttgtttagcagaagttacgatctgataggctgagcaatggaaaggggtgtgccgatcaatctta 312  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  26453096 aatcctataatatggtccaactttaaagaaaaaaaattgtttagcagaagttacgatctgataggctgaacaatggaaaggggtgtgccgatcaatcttg 26453195  T
Q  313 gagcttctaaagcactggaacaaattttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactgaannnnnnnctcc 412  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  26453196 gagcttctaaagcactggaacaaatattttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactgaatttttttctcc 26453295  T
Q  413 aatgctagaactca------------ttttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttac 500  Q
    ||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26453296 aatgctagaactcaacacacttcctattttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctctctgcttttcttac 26453395  T
Q  501 cttttctgtactttttctaatgcagtcagtgctagaacatgttctagtgggagaatttttctccacagggtcatccagctcgttgatctccaatacataa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26453396 cttttctgtactttttctaatgcagtcagtgctagaacatgttctagtgggagaattgttctccacagggtcatccagctcgttgatctccaatacataa 26453495  T
Q  601 aacataaaaatatattcttttgctaagaaaactaggaaagaataggcgttggagatgctcttatgacttaacatgtttttta 682  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453496 aacataaaaatatgttcttttgctaagaaaactaggaaagaataggcgttggagatgctcttatgacttaacatgtttttta 26453577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26452874 - 26452805
Alignment:
Q  1 tataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452874 tataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 26452805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 2e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 23676469 - 23676325
Alignment:
Q  93 ctttatttttgtcctactgggctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccctgtgaattg-ttaaaatttcacatg 191  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| | |||||||||||||||||||  ||||||| |||||||||||||||    
T  23676469 ctttatttttgtcctactgggatttctgtgctggtgtctcccatcactgacttgacggtaaatgctcacggaccccttgaattgcttaaaatttcacatg 23676370  T
Q  192 gggtgagaaaaacaagcattgaatcctataatatggtccaacttt 236  Q
    | |||||||||||||||||||||||||| ||| | ||||| ||||    
T  23676369 gagtgagaaaaacaagcattgaatcctagaatttagtccaccttt 23676325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 21538924 - 21539014
Alignment:
Q  1 tataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 91  Q
    ||||||||||||||| |||||||    |||||||||||||||||||| | ||||||||||| ||||| |||| ||  ||||||||||||||    
T  21538924 tataagccagcggtaattaactaccattggggtgtttttggtcatttccttgtgtttctaggaaacattgaaagtttaaaaagcaattctc 21539014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 5979786 - 5979853
Alignment:
Q  8 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 75  Q
    ||||||||||||||||  | |||||||||||||||||||| ||| ||||||||  |||||||||||||    
T  5979786 cagcggtagttaactaccgttggggtgtttttggtcatttccatttgtttctaagaaacaatgaatgt 5979853  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 4873127 - 4873037
Alignment:
Q  1 tataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 91  Q
    |||||| ||||||||||||||||  ||||  ||||||||| |||||| ||||||||| ||||||| |||| | ||| |||||| |||||||    
T  4873127 tataagtcagcggtagttaactaccgctgaagtgtttttgatcatttccatgtgtttttagaaaataatggaagtcaaaaaagaaattctc 4873037  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 3703658 - 3703584
Alignment:
Q  1 tataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 75  Q
    |||||| || |||||||||||||  ||||  |  |||||||||||||||||||||||||| ||||||||| ||||    
T  3703658 tataagtcaacggtagttaactaccgctgatgattttttggtcattttcatgtgtttctaaaaaacaatggatgt 3703584  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 12329026 - 12329068
Alignment:
Q  34 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtc 76  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||    
T  12329026 gtttttgatcattttcatgtgtttctaaaaaacaatggatgtc 12329068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 21538890 - 21538844
Alignment:
Q  35 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaa 81  Q
    |||||||| |||| |||||||||||||||||||||| ||||| ||||    
T  21538890 tttttggttatttccatgtgtttctagaaaacaatggatgtcaaaaa 21538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 25812305 - 25812263
Alignment:
Q  33 tgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 75  Q
    |||||||| |||||| |||||||||||||||||||||| ||||    
T  25812305 tgtttttgatcatttccatgtgtttctagaaaacaatggatgt 25812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 2605404 - 2605367
Alignment:
Q  49 catgtgtttctagaaaacaatgaatgtccaaaaagcaa 86  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  2605404 catgtgtttctaggaaacaatgaatgtcaaaaaagcaa 2605367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 48292387 - 48292432
Alignment:
Q  11 cggtagttaactattgctggggtgtttttggtcattttcatgtgtt 56  Q
    |||||||||||||  ||||| |||||||||||||||| ||||||||    
T  48292387 cggtagttaactaccgctggagtgtttttggtcatttacatgtgtt 48292432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 53860895 - 53860936
Alignment:
Q  35 tttttggtcattttcatgtgtttctagaaaacaatgaatgtc 76  Q
    ||||||||||||| ||||||||||||| |||||||| |||||    
T  53860895 tttttggtcatttccatgtgtttctaggaaacaatggatgtc 53860936  T

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Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 339 - 657
Target Start/End: Complemental strand, 47680588 - 47680266
Alignment:
Q  339 ttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactgaannnnnnn-ctccaatgctagaactca----------- 426  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||               
T  47680588 ttttgttcttagctgctaaatattgggtccaagtatgccatgtaggatttaacaaccattgagttttttttctccaatgctagaactcaacacactttct 47680489  T
Q  427 -ttttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttaccttttctgtactttttctaatgcag 525  Q
     ||||||||||||||||  |||| | |||||||||| ||  |||| ||||||||||||||| |  ||| |||||| |||||||           ||||||    
T  47680488 attttactttatgtaggaccctcgtgtttcttctcttatcatccattatacctcttctctctccccttctcttactttttctg-----------atgcag 47680400  T
Q  526 tcagtgctagaacatgttctagtgggagaatttttctccacagggtcatccagctcgttgatctccaatacataaaacataaaaatatattct--tttgc 623  Q
      | ||||||||| ||||||| |||||||| | |||||||||  |||||||||||| |||||||||||| ||||||| |||||||||| ||||  |||||    
T  47680399 caactgctagaacgtgttctaatgggagaactgttctccacaatgtcatccagctcattgatctccaatgcataaaatataaaaatatgttcttgtttgc 47680300  T
Q  624 taagaaaactaggaaagaataggcgttggagatg 657  Q
    |||||| || | ||||||| || |||||||||||    
T  47680299 taagaacaccaagaaagaacagacgttggagatg 47680266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 559 - 661
Target Start/End: Complemental strand, 31704810 - 31704706
Alignment:
Q  559 ttctccacagggtcatccagctcgttgatctccaatacataaaacataaaaatatattct--tttgctaagaaaactaggaaagaataggcgttggagat 656  Q
    |||||||||| ||||||||||||   |||||||||| |||| ||||||||||||| ||||  ||||||||||| |||| ||||||| |||  | ||||||    
T  31704810 ttctccacagtgtcatccagctcaacgatctccaatgcatacaacataaaaatatgttcttgtttgctaagaatactaagaaagaacaggaatcggagat 31704711  T
Q  657 gctct 661  Q
    |||||    
T  31704710 gctct 31704706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 49632910 - 49632995
Alignment:
Q  8 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtc-caaaaagcaattctcg 92  Q
    ||||||||||||||||   |  || ||||||||||||||| |||||||||||||||| ||||| |||||  |||||||||||||||    
T  49632910 cagcggtagttaactaccacgaggatgtttttggtcatttccatgtgtttctagaaatcaatggatgtcaaaaaaagcaattctcg 49632995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 11985492 - 11985458
Alignment:
Q  35 tttttggtcattttcatgtgtttctagaaaacaat 69  Q
    |||||||||||||||||||||||||||||||||||    
T  11985492 tttttggtcattttcatgtgtttctagaaaacaat 11985458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 30018653 - 30018564
Alignment:
Q  1 tataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 91  Q
    |||||||  ||| ||||||||||  ||| | ||||||||| ||||||||||| | |||||| ||||||||  ||| |||||||||||||||    
T  30018653 tataagcacgcgatagttaactaccgcttgagtgtttttgatcattttcatgcgcttctaggaaacaatggttgt-caaaaagcaattctc 30018564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 30018687 - 30018740
Alignment:
Q  34 gtttttggtcattttcatgtg-tttctagaaaacaatgaatgtccaaaaagcaa 86  Q
    |||||||||||||| |||||| ||||||| |||||||| ||||| |||||||||    
T  30018687 gtttttggtcatttccatgtgttttctaggaaacaatggatgtcaaaaaagcaa 30018740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 36724251 - 36724171
Alignment:
Q  11 cggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 91  Q
    |||||||||||||   ||||| ||||||||||||||| |||  | |||||||||||||  |||||  |||||| |||||||    
T  36724251 cggtagttaactaccactgggatgtttttggtcatttccatacgcttctagaaaacaacaaatgtaaaaaaaggaattctc 36724171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 514 - 642
Target Start/End: Complemental strand, 33948501 - 33948371
Alignment:
Q  514 tttctaatgcagtcagtgctagaacatgttctagtgggagaatttttctccacagggtcatccagctcgttgatctccaatacataaaacataaaaatat 613  Q
    ||||| |||||| || ||||| ||| ||||||||||| | || | |||||||||| |||||||| ||| ||||||||||||||||| |||||||||||||    
T  33948501 tttctgatgcagccactgctataacgtgttctagtggaataactattctccacagtgtcatccacctcattgatctccaatacatagaacataaaaatat 33948402  T
Q  614 attct--tttgctaagaaaactaggaaagaa 642  Q
     ||||  ||||||||||| |||| |||||||    
T  33948401 gttcttgtttgctaagaacactaagaaagaa 33948371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 25939371 - 25939281
Alignment:
Q  1 tataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 91  Q
    |||||||||||||||||||||||  ||| | |||||||||||| ||| ||| ||||||||| ||||||||||| | |||||| ||||||||    
T  25939371 tataagccagcggtagttaactaccgcttgtgtgtttttggtcttttccatatgtttctaggaaacaatgaatattcaaaaaacaattctc 25939281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 9040955 - 9041003
Alignment:
Q  34 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 82  Q
    |||||| ||||||| ||||||||||||| |||||||||||||| |||||    
T  9040955 gtttttagtcatttccatgtgtttctaggaaacaatgaatgtcaaaaaa 9041003  T

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Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 11503 - 11425
Alignment:
Q  13 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 91  Q
    |||||||||||  |||||  ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  11503 gtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 11425  T

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Target: scaffold0110; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 19240 - 19162
Alignment:
Q  13 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 91  Q
    |||||||||||  |||||  ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  19240 gtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 19162  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 572 - 661
Target Start/End: Original strand, 11727316 - 11727407
Alignment:
Q  572 catccagctcgttgatctccaatacataaaacataaaaatatattctt--ttgctaagaaaactaggaaagaataggcgttggagatgctct 661  Q
    |||||| ||| |||||||||||| |||| ||||||||||||| |||||  |||||||||| ||||| |||||| | ||||||||||| ||||    
T  11727316 catccaactcattgatctccaatgcatataacataaaaatatgttcttgattgctaagaacactagaaaagaacatgcgttggagatactct 11727407  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 10818875 - 10818927
Alignment:
Q  34 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 86  Q
    |||||||||||||| ||||||||| |||||||||||| ||||| |||||||||    
T  10818875 gtttttggtcatttccatgtgtttttagaaaacaatggatgtcaaaaaagcaa 10818927  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 10818845 - 10818787
Alignment:
Q  32 gtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 91  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||  ||||||||||||||    
T  10818845 gtgtttttggtaattttaatgtgtttctagaaaacaatg-atgttaaaaaagcaattctc 10818787  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 14613623 - 14613533
Alignment:
Q  1 tataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 91  Q
    ||||||||||| || | ||||||  | ||| ||||||||||| |||||||||||||||||| |||||||| |||    |||||||||||||    
T  14613623 tataagccagcagtggctaactaccgttggagtgtttttggttattttcatgtgtttctaggaaacaatggatgcgagaaaagcaattctc 14613533  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 4639521 - 4639566
Alignment:
Q  27 ctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaa 72  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||    
T  4639521 ctggggtgtttttgatcattttcatgtgtttctaagaaacaatgaa 4639566  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 607
Target Start/End: Original strand, 2210309 - 2210385
Alignment:
Q  531 gctagaacatgttctagtgggagaatttttctccacagggtcatccagctcgttgatctccaatacataaaacataa 607  Q
    |||| ||| |||||||||||||||| | ||||| |||| |||||||| ||  |||||||||||| |||| |||||||    
T  2210309 gctaaaacgtgttctagtgggagaactgttctctacagtgtcatccaccttattgatctccaatgcatacaacataa 2210385  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 28976687 - 28976770
Alignment:
Q  8 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 91  Q
    ||||||||||||||||| | | |  |||||||| |||||||||||| ||||||  |||||||| ||||   |||||||||||||    
T  28976687 cagcggtagttaactatcgtttgaatgtttttgatcattttcatgtatttctaagaaacaatggatgtgagaaaagcaattctc 28976770  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6706347 - 6706273
Alignment:
Q  1 tataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 75  Q
    |||||| || |||||||||||||  ||||   |||||||||| |||||||||||||| ||  |||||||||||||    
T  6706347 tataagtcaacggtagttaactaccgctgaaatgtttttggttattttcatgtgtttataagaaacaatgaatgt 6706273  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 4192001 - 4192054
Alignment:
Q  35 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaatt 88  Q
    ||||||||||||||||||||||| ||| |||||||| ||||  ||| |||||||    
T  4192001 tttttggtcattttcatgtgtttgtaggaaacaatggatgtgtaaacagcaatt 4192054  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 8367071 - 8367019
Alignment:
Q  34 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 86  Q
    ||||||||||||||  ||| |||||||| |||||||| ||||| |||||||||    
T  8367071 gtttttggtcatttctatgggtttctaggaaacaatggatgtcaaaaaagcaa 8367019  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 330 - 358
Target Start/End: Original strand, 11727230 - 11727258
Alignment:
Q  330 gaacaaattttttgttcttagctgctaaa 358  Q
    |||||||||||||||||||||||||||||    
T  11727230 gaacaaattttttgttcttagctgctaaa 11727258  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 35924635 - 35924595
Alignment:
Q  35 tttttggtcattttcatgtgtttctagaaaacaatgaatgt 75  Q
    ||||||||||||||||||| ||||||||||| |||| ||||    
T  35924635 tttttggtcattttcatgtttttctagaaaataatggatgt 35924595  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 27866683 - 27866752
Alignment:
Q  1 tataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 70  Q
    |||||| ||||||||||||||||| | | || |||||| |||||||||||| ||||||||| ||||||||    
T  27866683 tataagtcagcggtagttaactatcgttcggttgttttcggtcattttcatatgtttctaggaaacaatg 27866752  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 36390756 - 36390712
Alignment:
Q  42 tcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 86  Q
    |||||||||||||||||||||||||| | |||||| |||||||||    
T  36390756 tcattttcatgtgtttctagaaaacactaaatgtcaaaaaagcaa 36390712  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 48073090 - 48073016
Alignment:
Q  1 tataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 75  Q
    ||||||||||   ||||||||||| ||| | || ||||||||||||| ||||||||||||  |||||| ||||||    
T  48073090 tataagccagtaatagttaactatcgctagagtatttttggtcatttccatgtgtttctaataaacaaagaatgt 48073016  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 27747425 - 27747373
Alignment:
Q  13 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaa 65  Q
    |||||||||||  |||| | | ||||| |||||||||||||||||||||||||    
T  27747425 gtagttaactaccgctgagttatttttagtcattttcatgtgtttctagaaaa 27747373  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 39933632 - 39933664
Alignment:
Q  38 ttggtcattttcatgtgtttctagaaaacaatg 70  Q
    |||||||||||||||||||||||||||| ||||    
T  39933632 ttggtcattttcatgtgtttctagaaaataatg 39933664  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 30351507 - 30351451
Alignment:
Q  13 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaat 69  Q
    |||||||||||  | |||||||||||||||||||||||| ||||||||| |||||||    
T  30351507 gtagttaactaccgttggggtgtttttggtcattttcatatgtttctaggaaacaat 30351451  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 13613796 - 13613749
Alignment:
Q  35 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 82  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||    
T  13613796 tttttggtcattttcatgtgtttctagaaaacaatagatgtcgaaaaa 13613749  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 16396652 - 16396719
Alignment:
Q  8 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 75  Q
    ||||||||||||||||  | |||||||||||| |||||||||| || |||||| ||||||||| ||||    
T  16396652 cagcggtagttaactaccgttggggtgtttttagtcattttcacgtatttctaaaaaacaatggatgt 16396719  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 3806263 - 3806174
Alignment:
Q  1 tataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 91  Q
    |||||| |||| |||||| | ||||| |||| ||||||||||| |||| ||||||||||||||||| ||| ||||   |||||||||||||    
T  3806263 tataagtcagctgtagttgattattgttgggatgtttttggtcttttt-atgtgtttctagaaaacgatggatgtgacaaaagcaattctc 3806174  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 13793751 - 13793669
Alignment:
Q  4 aagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 86  Q
    |||||| | |||||||||||  | ||||||||||||||||||| |||| ||||||||  |||||||| ||||| ||| |||||    
T  13793751 aagccaaccgtagttaactaccgttggggtgtttttggtcattctcatatgtttctaagaaacaatggatgtcaaaacagcaa 13793669  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 37096644 - 37096596
Alignment:
Q  34 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 82  Q
    ||||||| |||||| |||||||||||||||||||||||| ||| |||||    
T  37096644 gtttttgatcatttccatgtgtttctagaaaacaatgaaggtcaaaaaa 37096596  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 39994520 - 39994590
Alignment:
Q  1 tataagccagcggtagttaactattgctggggtgtttttgg-tcattttcatgtgtttctagaaaacaatg 70  Q
    |||||| || |||||||||||| ||| |||  | ||||||| |||||| ||||||||||||||||||||||    
T  39994520 tataagtcaacggtagttaactgttgttggaatttttttgggtcatttccatgtgtttctagaaaacaatg 39994590  T

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