View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15401_high_42 (Length: 265)
Name: NF15401_high_42
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_high_42 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 27878068 - 27878319
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878068 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
27878167 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878168 |
atagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
27878267 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttc |
252 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27878268 |
tttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttc |
27878319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 81 - 252
Target Start/End: Complemental strand, 30968287 - 30968116
Alignment:
| Q |
81 |
agaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaag |
180 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968287 |
agaagccatgagttgagaaaatagcgtattcagggtgttgatgtgattcgttacggatgtggattcacccattcgaagagtgtagagccttctctttaag |
30968188 |
T |
|
| Q |
181 |
aatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttc |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
30968187 |
aatattctgttgtggagtgatttgacctcgtacaattttattagaatatcccagatctcctttaatgtcttc |
30968116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8480165 - 8480382
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| | |||||| ||||| ||||||| || | ||||| |||| || |
|
|
| T |
8480165 |
ttgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgtttattttcagctatcatgaaatctgatgttgtgagctgagcaa |
8480264 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||| ||||||| |||||| ||||||| ||| ||| || ||||| |||||| |||||||| || || | |||||||| ||||| |||| ||||| |
|
|
| T |
8480265 |
atagtgtattcatggtgtttatgtgatttgttgtcgatatgtattcattcattcggagagtgtaaagactccattttaagaaaattcttgtgtgaagtga |
8480364 |
T |
|
| Q |
201 |
tttgacctcgtacaattt |
218 |
Q |
| |
|
|| |||| ||||||||| |
|
|
| T |
8480365 |
cttcaccttgtacaattt |
8480382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30968329 - 30968283
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaag |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968329 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaag |
30968283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 251
Target Start/End: Complemental strand, 8481247 - 8481103
Alignment:
| Q |
107 |
tattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgac |
206 |
Q |
| |
|
|||||| |||||| ||||||| |||| ||| |||||||| |||||| |||||||||||||| || || ||||| ||| | | || ||||| ||||| |
|
|
| T |
8481247 |
tattcatggtgtttatgtgatttgttattgatatggattcattcattcggagagtgtagagcctccttttcaagaaaattattgtttgaagtgacttgac |
8481148 |
T |
|
| Q |
207 |
ctcgtacaattttattagagtatcccagatctcctttgctgtctt |
251 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||| |||| ||||| |
|
|
| T |
8481147 |
ctcgtacaatttaataagagtatcctagatctcccttgcagtctt |
8481103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 41719368 - 41719117
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41719368 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
41719269 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41719268 |
atagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
41719169 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttc |
252 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41719168 |
tttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttc |
41719117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 34352971 - 34352720
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352971 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattctccgctattttgaaatcagaagccgtgagttgagaaa |
34352872 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352871 |
atagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
34352772 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttc |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
34352771 |
tttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttc |
34352720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 23319250 - 23319006
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||||||||||||||||| ||||| |||||||| ||||| ||| ||| || || ||||| |||| || |
|
|
| T |
23319250 |
ttgatgatgagttgttcatatgaatgaggtaaactctgaagtagaagttttgcacgttcattttcagctatcatgacatctgaggctgtgagctgagcaa |
23319151 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||| ||||| | ||| || ||||||| |||| ||| |||| ||| ||||| |||||||||| ||| || |||||||| ||||| ||| ||||| |
|
|
| T |
23319150 |
atagtgtatttatggtatttatgtgatttgttattgatatggactcatacattcagagagtgtagaacctcctttttaagaaaattcttgcgtgaagtga |
23319051 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgc |
245 |
Q |
| |
|
|||||||||||||||||| || |||| ||| ||||||||||||| |
|
|
| T |
23319050 |
tttgacctcgtacaatttaataagagcatcttagatctcctttgc |
23319006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31502555 - 31502590
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactc |
36 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31502555 |
ttgatgatgagttgatcatacgaatcttgtaaactc |
31502590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 48701180 - 48701431
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701180 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
48701279 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701280 |
atagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
48701379 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttc |
252 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48701380 |
tttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttc |
48701431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 42266861 - 42266610
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42266861 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagctgtgagttgagaaa |
42266762 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266761 |
atagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
42266662 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttc |
252 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42266661 |
tttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttc |
42266610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 30949542 - 30949792
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30949542 |
ttgatgatgagttgatcatacgaatctggtaaactctggagtagaagttcagcacgctcattttccgctattttgaaatcagaagctgtgagttgagaaa |
30949641 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30949642 |
atagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
30949741 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgctgtctt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30949742 |
tttgacctcgtacaattttattagagtatcccagatctcctttgctgtctt |
30949792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 1999849 - 1999723
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||||| ||||||| || || |||||||||| || |
|
|
| T |
1999849 |
ttgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgttcattttcagctattgtgaaatctgaggctgtgagttgaggaa |
1999750 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgat |
127 |
Q |
| |
|
|||| ||||||| ||| || ||||||| |
|
|
| T |
1999749 |
atagtgtattcatggtatttatgtgat |
1999723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21514396 - 21514622
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||| |||||||| ||||||| |||||| |||| || ||||||||||| | | | |||| |||||| |||| |||||| |||| || ||||| ||| |
|
|
| T |
21514396 |
ttgacgatgagtttatcatacaaatctgataaaaactaaagtagaagtttaactctctcactttccgttattctgaaatttgaagttgtaagttggaaaa |
21514495 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
||| |||||| ||||| |||||||||| ||| | ||||||||| |||||||||||||||||||||| | ||||||||||||| |||||| ||| | |
|
|
| T |
21514496 |
ataacgtatttagggtattgatgtgatatgttgttgtcttggattcactcattcgaagagtgtagagccttatttttaagaatattcagttgtgaagtaa |
21514595 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagt |
227 |
Q |
| |
|
||||||||||| |||||||| |||||| |
|
|
| T |
21514596 |
tttgacctcgttcaattttactagagt |
21514622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 1999695 - 1999628
Alignment:
| Q |
178 |
aagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgc |
245 |
Q |
| |
|
||||| ||||| |||| ||||| ||||||||||||||||| || |||| |||||| ||||||||||| |
|
|
| T |
1999695 |
aagaaaattcttgtgtgaagtgacttgacctcgtacaatttaataagagcatcccatatctcctttgc |
1999628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 5822634 - 5822885
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5822634 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagctgtgagttgagaaa |
5822733 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822734 |
atagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
5822833 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttc |
252 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5822834 |
tttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttc |
5822885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2816622 - 2816873
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2816622 |
ttgatgatgagttgatcatacgaatctggtaaactctaaagtagaagttcagcacgctcattttccgctattttgaaatcagaagctgtgagttgagaaa |
2816721 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2816722 |
atagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
2816821 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttc |
252 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2816822 |
tttgacctcgtacaattttattaaagtatcccagatctcctttgctgtcttc |
2816873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 42585915 - 42585671
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||||| ||||||| || || ||||| |||| || |
|
|
| T |
42585915 |
ttgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgttcattttcagctattgtgaaatctgaggctgtgagctgagcaa |
42585816 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||| ||||||| ||| || ||||||| |||| ||| |||||||| |||||| |||||||||||||| || |||||||| ||||| |||| ||||| |
|
|
| T |
42585815 |
atagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcggagagtgtagagcctcctttttaagaaaattcttgtgtgaagtga |
42585716 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgc |
245 |
Q |
| |
|
||||||||||||||||| || |||| |||||||||||||||||| |
|
|
| T |
42585715 |
cttgacctcgtacaatttaataagagcatcccagatctcctttgc |
42585671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 47277139 - 47277381
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttca--gcacgctcattttccgctattttgaaatcagaagccgtgagttgaga |
98 |
Q |
| |
|
||||||||||| ||||||||| || |||| ||||| |||||||||||||| ||| ||||||||||||| || | ||| ||||| ||||| ||||| |
|
|
| T |
47277139 |
ttgatgatgaggtgatcatacaaagatggttaactcagaagtagaagttcaacacacactcattttccgcttttctaaaacgagaagttgtgagatgaga |
47277238 |
T |
|
| Q |
99 |
aaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagt |
198 |
Q |
| |
|
|||| || |||||| |||||| ||||||| ||| || |||||||||||| ||| || ||||||| | |||| ||||| |||||| | ||||| | | |
|
|
| T |
47277239 |
aaattgcatattcaaggtgtt-atgtgatatgtt--tgacgtggattcacccgttcaaaaagtgtagtgtcttccttttaataatattttattgtgaaat |
47277335 |
T |
|
| Q |
199 |
gatttgacctcgtacaattttattagagtatcccagatctcctttg |
244 |
Q |
| |
|
|||| | |||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
47277336 |
gattatatctcgtataattttattagagtatcacatatctcctttg |
47277381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 25877693 - 25877552
Alignment:
| Q |
99 |
aaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagt |
198 |
Q |
| |
|
|||||| ||||||| |||||| ||||||| |||| ||| |||||||| ||||| |||||| |||||||| || |||||||| ||||| |||| ||| |
|
|
| T |
25877693 |
aaatagtgtattcatggtgtttatgtgatttgttattgatatggattcattcattcaaagagtatagagcctcctttttaagaaaattcttgtgtgaagt |
25877594 |
T |
|
| Q |
199 |
gatttgacctcgtacaattttattagagtatcccagatctcc |
240 |
Q |
| |
|
|| ||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
25877593 |
gacttgacctcgtacaatttaaaaagagcgtcccagatctcc |
25877552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 9443451 - 9443702
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9443451 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagctgtgagttgagaaa |
9443550 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443551 |
atagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
9443650 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttc |
252 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9443651 |
tttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttc |
9443702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 24597841 - 24598085
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||||| ||||||| || || ||||| |||| || |
|
|
| T |
24597841 |
ttgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgttcattttcagctattgtgaaatctgaggctgtgagctgagcaa |
24597940 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||| ||||||| ||| || ||||||| |||| ||| |||||||| |||||| |||||||||||||| || |||||||| ||||| |||| ||||| |
|
|
| T |
24597941 |
atagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcggagagtgtagagcctcctttttaagaaaattcttgtgtgaagtga |
24598040 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgc |
245 |
Q |
| |
|
||||||||||||||||| || |||| |||||||||||||||||| |
|
|
| T |
24598041 |
cttgacctcgtacaatttaataagagcatcccagatctcctttgc |
24598085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 826437 - 826186
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
826437 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagctgtgagttgagaaa |
826338 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
826337 |
atagcgtattaagggtgttgatgtgatctgttacggatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
826238 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttc |
252 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
826237 |
tttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttc |
826186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 13843156 - 13843393
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
||||||||||||||||||||| ||| || || ||| ||||||||||||||| || |||||||||| |||||| |||||||||||| || |||||||||| |
|
|
| T |
13843156 |
ttgatgatgagttgatcatacaaatttgatatactatgaagtagaagttcaacatgctcattttctgctattatgaaatcagaagttgtaagttgagaaa |
13843255 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
|||| ||||||| ||| || ||||||| |||| ||||||||||||| ||||| ||||||||||||||| | |||||||||||| |||| || ||| | |
|
|
| T |
13843256 |
atagtgtattcaaggtcttaatgtgatatgttattgatgtggattcactcattctaagagtgtagagcctcccatttaagaatattatgttatgaagtta |
13843355 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatct |
238 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
13843356 |
tttgacctcgtacaattttattagagtgtcctagatct |
13843393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 8137817 - 8138068
Alignment:
| Q |
1 |
ttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccgtgagttgagaaa |
100 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| | || || ||||| |
|
|
| T |
8137817 |
ttgatgatgagttgatcatacaaatatggtaaactctgaagtagaagttccacacgctcattttccgctattttgaaattagaagttgggattttagaaa |
8137916 |
T |
|
| Q |
101 |
atagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtga |
200 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8137917 |
ataccgtattcagggtgttgatgtgatctgttatgaatgtggattcacccattcgaagagtgtagagcctcctctttaagaatattctgttgcggagtga |
8138016 |
T |
|
| Q |
201 |
tttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
8138017 |
tttgacctcgtacaattttattagagtatccccgatctcgtttgttgtcttc |
8138068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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