View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15401_high_49 (Length: 250)

Name: NF15401_high_49
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15401_high_49
NF15401_high_49
[»] chr4 (20 HSPs)
chr4 (16-250)||(13631676-13631917)
chr4 (16-60)||(11816629-11816673)
chr4 (12-60)||(31081574-31081622)
chr4 (16-59)||(44183681-44183724)
chr4 (16-58)||(50281821-50281863)
chr4 (18-59)||(11108432-11108473)
chr4 (16-60)||(9091564-9091608)
chr4 (16-60)||(26280212-26280256)
chr4 (16-60)||(45044507-45044551)
chr4 (16-52)||(45045163-45045199)
chr4 (16-59)||(50282807-50282850)
chr4 (22-60)||(24297037-24297075)
chr4 (18-52)||(26281128-26281162)
chr4 (16-50)||(44182711-44182745)
chr4 (18-60)||(40680604-40680646)
chr4 (18-52)||(43630198-43630232)
chr4 (80-125)||(13630174-13630219)
chr4 (76-125)||(44182634-44182683)
chr4 (16-60)||(9087235-9087279)
chr4 (16-52)||(11816008-11816044)
[»] chr7 (11 HSPs)
chr7 (12-60)||(16956069-16956117)
chr7 (18-58)||(25444956-25444996)
chr7 (16-60)||(30474415-30474459)
chr7 (16-59)||(14682037-14682080)
chr7 (20-59)||(17238517-17238556)
chr7 (18-60)||(18297293-18297335)
chr7 (16-60)||(17236202-17236246)
chr7 (16-60)||(17278538-17278582)
chr7 (22-60)||(8684857-8684895)
chr7 (16-60)||(14682868-14682912)
chr7 (16-60)||(30475045-30475089)
[»] chr5 (13 HSPs)
chr5 (18-59)||(24042556-24042597)
chr5 (16-60)||(37192347-37192391)
chr5 (16-60)||(38385676-38385720)
chr5 (16-60)||(42766956-42767000)
chr5 (18-60)||(13824522-13824564)
chr5 (18-60)||(19797803-19797845)
chr5 (18-60)||(24041877-24041919)
chr5 (18-59)||(13823840-13823881)
chr5 (16-60)||(23082677-23082721)
chr5 (16-60)||(38385007-38385051)
chr5 (16-51)||(37191742-37191777)
chr5 (18-60)||(6794656-6794698)
chr5 (19-52)||(16920150-16920183)
[»] chr3 (5 HSPs)
chr3 (16-60)||(33389313-33389357)
chr3 (16-60)||(54834070-54834114)
chr3 (16-59)||(52255405-52255448)
chr3 (18-60)||(34817470-34817512)
chr3 (18-52)||(46921936-46921970)
[»] chr1 (15 HSPs)
chr1 (16-60)||(24508348-24508392)
chr1 (16-60)||(52751437-52751481)
chr1 (16-60)||(50123834-50123878)
chr1 (17-52)||(29022436-29022471)
chr1 (18-60)||(31697254-31697296)
chr1 (16-58)||(50124476-50124518)
chr1 (18-52)||(51241871-51241905)
chr1 (18-58)||(969043-969083)
chr1 (16-52)||(31698160-31698196)
chr1 (18-60)||(36142249-36142291)
chr1 (18-52)||(51242854-51242888)
chr1 (80-125)||(36142182-36142227)
chr1 (18-59)||(49652538-49652579)
chr1 (89-125)||(1524081-1524117)
chr1 (89-125)||(29022499-29022535)
[»] chr2 (13 HSPs)
chr2 (18-60)||(8892938-8892980)
chr2 (18-58)||(10709241-10709281)
chr2 (16-60)||(29519297-29519341)
chr2 (16-59)||(29519921-29519964)
chr2 (18-60)||(12601376-12601418)
chr2 (18-60)||(12602474-12602516)
chr2 (18-52)||(16330715-16330749)
chr2 (18-60)||(20685767-20685809)
chr2 (16-60)||(8029884-8029928)
chr2 (18-60)||(8885797-8885839)
chr2 (18-60)||(10708265-10708307)
chr2 (18-60)||(28189586-28189628)
chr2 (16-60)||(18950875-18950919)
[»] chr8 (3 HSPs)
chr8 (18-59)||(13364189-13364230)
chr8 (18-59)||(44553268-44553309)
chr8 (16-60)||(13462244-13462288)
[»] chr6 (6 HSPs)
chr6 (16-59)||(10998864-10998907)
chr6 (16-60)||(901558-901602)
chr6 (16-52)||(8850365-8850401)
chr6 (18-60)||(12261367-12261409)
chr6 (76-125)||(10998796-10998845)
chr6 (16-60)||(27128983-27129027)
[»] scaffold0202 (1 HSPs)
scaffold0202 (18-60)||(22083-22125)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 13631676 - 13631917
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacgnnnnnnnnnnnnnnnaacagaaatgacaaaaacaggtaacggaaataaaaataaa 115  Q
    |||||||||||||||||||||||||||||||| |||| |||||||               |||||||| ||| ||||||||||||||||||||| |||||    
T  13631676 atgatggaaggagaaggaagaagatgaataatgtaaaccctaacgtttttgaatttttttaacagaaaggaccaaaacaggtaacggaaataaagataaa 13631775  T
Q  116 gtacttaaacgatcnnnnnnnnagttaaggga--------atatcaaataaatatttaaaggaccaaaaactgatttacgccttttattaacattcttta 207  Q
     |||| ||||| ||        ||| || |||        |||||||||||||| |||| |||||||||||  ||||| |||||||||||||||| ||||    
T  13631776 ttactcaaacggtcttttttttagtaaaaggaccaaggtgatatcaaataaatacttaagggaccaaaaacgcatttaagccttttattaacatt-ttta 13631874  T
Q  208 agttaaatcatttattgcaataataacccaatagtgttgactt 250  Q
    |||||||||| || |||||||||||||||||||| ||||||||    
T  13631875 agttaaatcagtttttgcaataataacccaatagagttgactt 13631917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 11816629 - 11816673
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11816629 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 11816673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 31081574 - 31081622
Alignment:
Q  12 gaaaatgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  31081574 gaaaatgatggaaggagaaggaaaaagatgaataatataaaccctaacg 31081622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 44183681 - 44183724
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaac 59  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  44183681 atgatggaaggagaaggaagaagatgaataatataaaccctaac 44183724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 50281863 - 50281821
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaa 58  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  50281863 atgatggaaggagaaggaagaagatgaataatataaaccctaa 50281821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 11108473 - 11108432
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaac 59  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  11108473 gatggaaggagaaggaagaagatgaataatataaaccctaac 11108432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 9091608 - 9091564
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||| |||||||||||||||||||||||||||||||| |||||||    
T  9091608 atgaaggaaggagaaggaagaagatgaataatataaaccctaacg 9091564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 26280256 - 26280212
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||    
T  26280256 atgatggaaggagaaggaagaagatgaataataaaaaccctaacg 26280212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 45044551 - 45044507
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||||||||||| |||||||||||||||||||||||| |||||||    
T  45044551 atgatggaaggataaggaagaagatgaataatataaaccctaacg 45044507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 45045163 - 45045199
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaa 52  Q
    |||||||||||||||||||||||||||||||||||||    
T  45045163 atgatggaaggagaaggaagaagatgaataatataaa 45045199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 50282807 - 50282850
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaac 59  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  50282807 atgatggaaggagaaggaagaagatcaataatataaaccctaac 50282850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 24297037 - 24297075
Alignment:
Q  22 gaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  24297037 gaaggagaatgaagaagatgaataatataaatcctaacg 24297075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 26281128 - 26281162
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaa 52  Q
    |||||||||||||||||||||||||||||||||||    
T  26281128 gatggaaggagaaggaagaagatgaataatataaa 26281162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 44182745 - 44182711
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatata 50  Q
    |||||||||||||||||||||||||||||||||||    
T  44182745 atgatggaaggagaaggaagaagatgaataatata 44182711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 40680646 - 40680604
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||    
T  40680646 gatggaaagagaaggaagaagatgaataatacaaagcctaacg 40680604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 43630198 - 43630232
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaa 52  Q
    ||||||||||||| |||||||||||||||||||||    
T  43630198 gatggaaggagaatgaagaagatgaataatataaa 43630232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 13630219 - 13630174
Alignment:
Q  80 gaaatgacaaaaacaggtaacggaaataaaaataaagtacttaaac 125  Q
    |||||||| ||||||||||| ||| ||||| |||||||||||||||    
T  13630219 gaaatgaccaaaacaggtaatggagataaagataaagtacttaaac 13630174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 44182683 - 44182634
Alignment:
Q  76 aacagaaatgacaaaaacaggtaacggaaataaaaataaagtacttaaac 125  Q
    |||||||| ||| ||||||||||||||| ||||| |||||||||| ||||    
T  44182683 aacagaaaggaccaaaacaggtaacggagataaagataaagtactcaaac 44182634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 9087235 - 9087279
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||| ||| ||||||||||||||||||||||| ||| |||||||    
T  9087235 atgatagaaagagaaggaagaagatgaataatacaaagcctaacg 9087279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 11816044 - 11816008
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaa 52  Q
    ||||||||| || ||||||||||||||||||||||||    
T  11816044 atgatggaaagaaaaggaagaagatgaataatataaa 11816008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 16956117 - 16956069
Alignment:
Q  12 gaaaatgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16956117 gaaaatgatggaaggagaaggaagaagatgaataatataaaccctaacg 16956069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 25444956 - 25444996
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaa 58  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  25444956 gatggaaggagaaggaagaagatgaataatataaaccctaa 25444996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 30474459 - 30474415
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||||||||||||||| |||||||||||||||||||| |||||||    
T  30474459 atgatggaaggagaagcaagaagatgaataatataaaccctaacg 30474415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 14682080 - 14682037
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaac 59  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||    
T  14682080 atgatagaaggagaaggaagaagatgaataatataaaccctaac 14682037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 17238517 - 17238556
Alignment:
Q  20 tggaaggagaaggaagaagatgaataatataaatcctaac 59  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  17238517 tggaaggagaaggaagaagatgaataatataaaccctaac 17238556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 18297335 - 18297293
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  18297335 gatggaaggagaaggaagaagatgaataatacaaaccctaacg 18297293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 17236246 - 17236202
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||||||||  |||||||||||||||||||||||||| |||||||    
T  17236246 atgatggaaaaagaaggaagaagatgaataatataaaccctaacg 17236202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 17278582 - 17278538
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  17278582 atgatggaaagagaaggaagaagatgaataatacaaaccctaacg 17278538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 8684895 - 8684857
Alignment:
Q  22 gaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  8684895 gaaggagaaggaagaagatgaataatacaaaccctaacg 8684857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 14682868 - 14682912
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||||| ||||| ||||||||||||||| |||||||| |||||||    
T  14682868 atgatgaaaggataaggaagaagatgaaaaatataaaccctaacg 14682912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 30475045 - 30475089
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||| |||| || ||||||||||||||||||||| |||||||    
T  30475045 atgatgggaggataaagaagaagatgaataatataaaccctaacg 30475089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 24042556 - 24042597
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaac 59  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24042556 gatggaaggagaaggaagaagatgaataatataaatcctaac 24042597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 37192347 - 37192391
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  37192347 atgatggaaggagaaggaagaagatgaataatataaaccctaacg 37192391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 38385676 - 38385720
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  38385676 atgatggaaggagaaggaagaagatgaataatataaaccctaacg 38385720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 42767000 - 42766956
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  42767000 atgatggaaggagaaggaagaagatgaataatataaaccctaacg 42766956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 13824522 - 13824564
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  13824522 gatggaaggagaaggaagaagatgaataatataaaccctaacg 13824564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 19797845 - 19797803
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  19797845 gatggaaggagaaggaagaagatgaataatataaaccctaacg 19797803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 24041919 - 24041877
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  24041919 gatggaaggagaaggaagaagatgaataatataaaccctaacg 24041877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 13823881 - 13823840
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaac 59  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  13823881 gatggaaggagaaggaagaagatgaataatataaaccctaac 13823840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 23082721 - 23082677
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  23082721 atgatggaaagagaaggaagaagatgaataatacaaagcctaacg 23082677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 38385051 - 38385007
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||| || |||||||||||||||||||||||| |||||||    
T  38385051 atgatggaaagataaggaagaagatgaataatataaaccctaacg 38385007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 37191777 - 37191742
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataa 51  Q
    ||||||||| ||||||||||||||||||||||||||    
T  37191777 atgatggaaagagaaggaagaagatgaataatataa 37191742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 6794656 - 6794698
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||    
T  6794656 gatggaaagagaaggaagaagatgaataatacaaaccctaacg 6794698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 16920183 - 16920150
Alignment:
Q  19 atggaaggagaaggaagaagatgaataatataaa 52  Q
    |||||| |||||||||||||||||||||||||||    
T  16920183 atggaaagagaaggaagaagatgaataatataaa 16920150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 33389357 - 33389313
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  33389357 atgatggaaggagaaggaagaagatgaataatataaaccctaacg 33389313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 54834114 - 54834070
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||||||||||| |||||||||||||||||||||||| |||||||    
T  54834114 atgatggaaggataaggaagaagatgaataatataaaccctaacg 54834070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 52255405 - 52255448
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaac 59  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||    
T  52255405 atgatggaaggagaagaaagaagatgaatgatataaaccctaac 52255448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 34817512 - 34817470
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||| |||||||||||||||||||||||||| ||| |||||||    
T  34817512 gatgaaaggagaaggaagaagatgaataatacaaaccctaacg 34817470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 46921936 - 46921970
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaa 52  Q
    |||||||||||||||||||| ||||||||||||||    
T  46921936 gatggaaggagaaggaagaatatgaataatataaa 46921970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 24508392 - 24508348
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  24508392 atgatggaaggagaaggaagaagatgaataatatgaatcctaacg 24508348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 52751437 - 52751481
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  52751437 atgatggaaggagaaggaagaagatgaataatataattcctaacg 52751481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 50123878 - 50123834
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||    
T  50123878 atgatggaaggagaaggaaaaagatgaataatataaaccctaacg 50123834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 29022436 - 29022471
Alignment:
Q  17 tgatggaaggagaaggaagaagatgaataatataaa 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  29022436 tgatggaaggagaaggaagaagatgaataatataaa 29022471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 31697296 - 31697254
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||| ||||||||||| |||||||    
T  31697296 gatggaaggagaaggaagaagataaataatataaaccctaacg 31697254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 50124476 - 50124518
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaa 58  Q
    ||||| |||||| ||||||||||||||||||||||||||||||    
T  50124476 atgatagaaggataaggaagaagatgaataatataaatcctaa 50124518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 51241905 - 51241871
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaa 52  Q
    |||||||||||||||||||||||||||||||||||    
T  51241905 gatggaaggagaaggaagaagatgaataatataaa 51241871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 969043 - 969083
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaa 58  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  969043 gatggaaggagaaggaagaagataaataatataaaccctaa 969083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 31698160 - 31698196
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaa 52  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31698160 atgatgaaaggagaaggaagaagatgaataatataaa 31698196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 36142291 - 36142249
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||    
T  36142291 gatggaaagagaaggaagaagatgaataatacaaaccctaacg 36142249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 51242854 - 51242888
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaa 52  Q
    |||||||| ||||||||||||||||||||||||||    
T  51242854 gatggaagaagaaggaagaagatgaataatataaa 51242888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 36142227 - 36142182
Alignment:
Q  80 gaaatgacaaaaacaggtaacggaaataaaaataaagtacttaaac 125  Q
    |||| ||| ||||||||||||||| ||||| |||||||||||||||    
T  36142227 gaaaggaccaaaacaggtaacggagataaagataaagtacttaaac 36142182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 49652579 - 49652538
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaac 59  Q
    |||||||||||||||| |||||||||||||| ||| ||||||    
T  49652579 gatggaaggagaaggatgaagatgaataatacaaaccctaac 49652538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 1524117 - 1524081
Alignment:
Q  89 aaaacaggtaacggaaataaaaataaagtacttaaac 125  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  1524117 aaaacaggtaacggaaataaagataaagtactcaaac 1524081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 29022499 - 29022535
Alignment:
Q  89 aaaacaggtaacggaaataaaaataaagtacttaaac 125  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  29022499 aaaacaggtaacggagataaagataaagtacttaaac 29022535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 8892938 - 8892980
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  8892938 gatggaaggagaaggaagaagatgaataatataaaccctaacg 8892980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 10709241 - 10709281
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaa 58  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  10709241 gatggaaggagaaggaagaagatgaataatataaaccctaa 10709281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 29519341 - 29519297
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||    
T  29519341 atgatggaaggagaaggaagaagataaataatataaaccctaacg 29519297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 29519921 - 29519964
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaac 59  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||    
T  29519921 atgatggaaagagaaggaagaagatgaataatataaaccctaac 29519964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 12601418 - 12601376
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  12601418 gatggaaggagaatgaagaagatgaataatataaaccctaacg 12601376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 12602474 - 12602516
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||| |||||||||||||||||||||||||||||| |||||||    
T  12602474 gatgaaaggagaaggaagaagatgaataatataaaccctaacg 12602516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 16330715 - 16330749
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaa 52  Q
    |||||||||||||||||||||||||||||||||||    
T  16330715 gatggaaggagaaggaagaagatgaataatataaa 16330749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 20685809 - 20685767
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||| ||||||||||||||||||||||| |||||||||||    
T  20685809 gatggaaagagaaggaagaagatgaataatacaaatcctaacg 20685767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 8029884 - 8029928
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||    
T  8029884 atgatggaaagagaaggaagaagatgaataatacaaaacctaacg 8029928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 8885839 - 8885797
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||    
T  8885839 gatggaaggtgaaggaaaaagatgaataatataaaccctaacg 8885797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 10708307 - 10708265
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||||||||||||||||||||||||| |||| ||| |||||||    
T  10708307 gatggaaggagaaggaagaagatgaacaatacaaaccctaacg 10708265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 28189628 - 28189586
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||    
T  28189628 gatggaaagagaaggaagaagatgaataatacaaaccctaacg 28189586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 18950919 - 18950875
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||||||||||| ||  |||||||||||||||||||| |||||||    
T  18950919 atgatggaaggataaaaaagaagatgaataatataaaccctaacg 18950875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 13364230 - 13364189
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaac 59  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  13364230 gatggaaggagaaggaagaagatgaataatataaaccctaac 13364189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 44553309 - 44553268
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaac 59  Q
    |||||| |||||||||||||||||||||||||||| ||||||    
T  44553309 gatggagggagaaggaagaagatgaataatataaaccctaac 44553268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 13462288 - 13462244
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||| ||| ||||||||||||||||||||||| ||| |||||||    
T  13462288 atgattgaaagagaaggaagaagatgaataatacaaagcctaacg 13462244  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 10998907 - 10998864
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaac 59  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||    
T  10998907 atgatggaaggagaaggaagaagatgaataacataaaccctaac 10998864  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 901602 - 901558
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||    
T  901602 atgatggaagaagaaggaagaagatgaatgatataaaccctaacg 901558  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 8850401 - 8850365
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaa 52  Q
    |||||||||||| ||||||||||||||||||||||||    
T  8850401 atgatggaaggataaggaagaagatgaataatataaa 8850365  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 12261367 - 12261409
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||    
T  12261367 gatggaaagagaaggaagaagatgaataatacaaagcctaacg 12261409  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 10998845 - 10998796
Alignment:
Q  76 aacagaaatgacaaaaacaggtaacggaaataaaaataaagtacttaaac 125  Q
    |||||||  ||| ||||||||||||||| |||||||||||||||| ||||    
T  10998845 aacagaagagaccaaaacaggtaacggagataaaaataaagtactcaaac 10998796  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 27129027 - 27128983
Alignment:
Q  16 atgatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||| |||||||||||| |||||||||| ||| |||||||    
T  27129027 atgatggaaagagaaggaagaacatgaataatacaaaccctaacg 27128983  T

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Target: scaffold0202 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 22083 - 22125
Alignment:
Q  18 gatggaaggagaaggaagaagatgaataatataaatcctaacg 60  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  22083 gatggaaggagaaggaagaagatgaataataaaaaccctaacg 22125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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