View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15401_high_55 (Length: 237)
Name: NF15401_high_55
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_high_55 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33512000 - 33511784
Alignment:
| Q |
1 |
aataatttgactatgttcatataatatgtgttaacttcctctnnnnnnnngtgttgatttatgttagaaagnnnnnnncttgtgataatttttattattt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
33512000 |
aataatttgactatgttcatataacatgtgttaatttcctctaaaaaaaagtgttgatttatgttacaaagaaaaaaacttgtgataatttttattattt |
33511901 |
T |
|
| Q |
101 |
tataataaaatttaccattaaattttgtgtcaacatataatgaagttgaataaaatgaatctatnnnnnnnnnnnnnnnngttggcttaaaggagattaa |
200 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33511900 |
tataaaaaaatttaccataaaattttgtgtcaacatataatgaagttgaataaaatgaatctataaaaaaaaaaaa-----ttggcttaaaggagattaa |
33511806 |
T |
|
| Q |
201 |
tcgtatttttattcaacatatt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33511805 |
tcgtatttttattcaacatatt |
33511784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University