View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_high_65 (Length: 204)
Name: NF15401_high_65
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_high_65 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 40280483 - 40280303
Alignment:
| Q |
19 |
cccctaggcctccaccatttgaatacacgccattaacaccccccacacgccctattgatcctcaaacattcttctattccgaactcatcacttctcttcc |
118 |
Q |
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| T |
40280483 |
cccctaggcctccaccatttgaatacacgccattaacaccctccacacgccctattgatcctcaaacattcttctattccgaactcatcacttctcttcc |
40280384 |
T |
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| Q |
119 |
tcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactaccatcaagaacaaga |
199 |
Q |
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| T |
40280383 |
tcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcatcaagaacaaga |
40280303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 40457867 - 40458047
Alignment:
| Q |
19 |
cccctaggcctccaccatttgaatacacgccattaacaccccccacacgccctattgatcctcaaacattcttctattccgaactcatcacttctcttcc |
118 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40457867 |
cccctagacctccaccatttgaatacacgccattaacaccctccacacgccctattgatcctcaaacattcttctattccgaactcatcacttctcttcc |
40457966 |
T |
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| Q |
119 |
tcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactaccatcaagaacaaga |
199 |
Q |
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| T |
40457967 |
tcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcatcaagaacaaga |
40458047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 32 - 171
Target Start/End: Complemental strand, 40285452 - 40285310
Alignment:
| Q |
32 |
accatttgaatacacgccattaacaccccccacacg---ccctattgatcctcaaacattcttctattccgaactcatcacttctcttcctcgtcctcct |
128 |
Q |
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||||| ||||||||| |||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||||| || |||||||| ||||||| |
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| T |
40285452 |
accatctgaatacacaccatcaacaccccgcacgcgtctccctattgatccacagacattcttctattccgaactcataaccaatcttcctcatcctcct |
40285353 |
T |
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| Q |
129 |
aattttgactctaaccctaataatcttgccctaattcccaaat |
171 |
Q |
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|||||||||||| ||| | |||||||||||||||| ||||||| |
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| T |
40285352 |
aattttgactctgaccttgataatcttgccctaatccccaaat |
40285310 |
T |
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