View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_high_7 (Length: 564)
Name: NF15401_high_7
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Original strand, 3527408 - 3527944
Alignment:
| Q |
17 |
gaagtgatttaaaatcaatattccatataccaaaaggctcactcgcattactttctttatctctaatatagtaagaaccttgtgcagtccataaagccca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527408 |
gaagtgatttaaaatcaatattccatataccaaaaggctcactcgcattactttctttatctctaatatagtaagaaccttgtgcagtccataaagccca |
3527507 |
T |
|
| Q |
117 |
atccaaatcaaccctagcaagataagctaacatacatgacaagaatctttgattgaatgtttgattcttgtcatcaatagcagtccagtctacaccaaat |
216 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
3527508 |
atccaagtcaaccccagcaagataagctaacatacatgacaagaatctttgattgaatgtttgattcttgtcatcaatagcagtcaagtcagcaccaaat |
3527607 |
T |
|
| Q |
217 |
tcactcataaccaatggattagggttagaaccactcattagaaaccctgccttatcattcaaattattcattacattagaacattttttgttcaatggtt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3527608 |
tcactcataaccaatggattagggttagaaccactcattagaaaccctgccttatcattcaaattattcattacattagcacattttttgttcaatggtt |
3527707 |
T |
|
| Q |
317 |
gtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgtacactaatttgtctcctatgcttatgtttagaggatttgttttcaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
3527708 |
gtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttgtgtttagaggatttgttttcaa |
3527807 |
T |
|
| Q |
417 |
gaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattgggattttctttgtgaaccgttgttgctccttggctcatgtatttttgc |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| |
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| T |
3527808 |
gaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattgggattttctttgtgaactgttgttgctccttggctcatgtacttctgc |
3527907 |
T |
|
| Q |
517 |
caactgcttatgttttgacttggacctcttagttcat |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
3527908 |
caactgcttatgttttgacttggacctcttagttcat |
3527944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 553
Target Start/End: Original strand, 3531847 - 3532371
Alignment:
| Q |
17 |
gaagtgatttaaaatcaatattccatataccaaaaggctcactcgcattactttctttatctctaatatagtaagaaccttgtgcagtccataaagccca |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || |||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3531847 |
gaagtgatttaaaatcaatattccatagaccataatgctcactcacattactttccttttctctaatatagtaagaaccttgtgcagtccataaagccca |
3531946 |
T |
|
| Q |
117 |
atccaaatcaaccctagcaagataagctaacatacatgacaagaatctttgattgaatgtttgattcttgtcatcaatagcagtccagtctacaccaaat |
216 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||| ||||||| |
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|
| T |
3531947 |
atccaagtccaccccagcaagataagctaacatacatgacaagaatctttgatt------------cttgtcatccatatcagtcatgtctaaaccaaat |
3532034 |
T |
|
| Q |
217 |
tcactcataaccaatggattagggttagaaccactcattagaaaccctgccttatcattcaaattattcattacattagaacattttttgttcaatggtt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |||||||||||| | |||||||| ||||||||||| |
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|
| T |
3532035 |
tcactcataaccaatggattagggttagaaccactcattagaaatccagccctatcattcaatccattcattacattggcacatttttggttcaatggtt |
3532134 |
T |
|
| Q |
317 |
gtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgtacactaatttgtctcctatgcttatgtttagaggatttgttttcaa |
416 |
Q |
| |
|
|||||| || | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
3532135 |
tcacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttgtgtttagaggatttgttttcaa |
3532234 |
T |
|
| Q |
417 |
gaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattgggattttctttgtgaaccgttgttgctccttggctcatgtatttttgc |
516 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||| |
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|
| T |
3532235 |
gaagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgc |
3532334 |
T |
|
| Q |
517 |
caactgcttatgttttgacttggacctcttagttcat |
553 |
Q |
| |
|
||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
3532335 |
caattgtctatgttttgacctggacctcttagttcat |
3532371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 210 - 553
Target Start/End: Original strand, 3554900 - 3555243
Alignment:
| Q |
210 |
accaaattcactcataaccaatggattagggttagaaccactcattagaaaccctgccttatcattcaaattattcattacattagaacattttttgttc |
309 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3554900 |
accaaattcactcataaccaatggtttagggttagaaccactcatgagaaaccctgccttatcattcaaattattcattacattagcacattttttgttc |
3554999 |
T |
|
| Q |
310 |
aatggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgtacactaatttgtctcctatgcttatgtttagaggatttg |
409 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |||||| | | |||||||| |||| |
|
|
| T |
3555000 |
aatggttgcttgtcccaatcacttcgttccccacttgaccatgcataggaatgtacctcgtacaccaatttgttccctatgttaacatttagaggctttg |
3555099 |
T |
|
| Q |
410 |
ttttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattgggattttctttgtgaaccgttgttgctccttggctcatgta |
509 |
Q |
| |
|
| |||||||||||||||||| ||||||| || |||||||||||||| || ||||||| |||||| |||| ||||| ||||| ||||||||||||||||| |
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|
| T |
3555100 |
tcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaagactagaacatctggatttgctttatgaacagttgtagctccttggctcatgta |
3555199 |
T |
|
| Q |
510 |
tttttgccaactgcttatgttttgacttggacctcttagttcat |
553 |
Q |
| |
|
|| |||||| || || |||||| |||||||||||||||||| |
|
|
| T |
3555200 |
cttgtgccaattgttttcgttttgttttggacctcttagttcat |
3555243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 553
Target Start/End: Original strand, 3549128 - 3549656
Alignment:
| Q |
17 |
gaagtgatttaaaatcaatattccatataccaaaaggctcactcgcattactttctttatctctaatatagtaagaaccttgtgcagtccataaagccca |
116 |
Q |
| |
|
||||||| ||||||||||| |||||| |||| || | || ||| || || ||||||| |||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
3549128 |
gaagtgaactaaaatcaatactccataaaccataatgttccctcacaatattttctttttctctaatatagtaagaaccttgtgcagcccacaaagccca |
3549227 |
T |
|
| Q |
117 |
atccaaatcaaccctagcaagataagctaacatacatgacaagaatctttgattgaatgtttgattcttgtcatcaatagcagtcca-gtctacaccaaa |
215 |
Q |
| |
|
||| ||||| || | | |||||||||| || ||||||||||| |||| ||||| ||| |||||| ||| |||| ||| | |||||| |
|
|
| T |
3549228 |
atctaaatccactccaccaagataagccaaaatacatgacaaatatctctgatt------ttg------gtcatctatattt-tccatgtccataccaaa |
3549314 |
T |
|
| Q |
216 |
ttcactcataaccaatggattagggttagaaccactcattagaaaccctgccttatcattcaaattattcattacatta----gaacattttttgttcaa |
311 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| | ||||||||| |||| |
|
|
| T |
3549315 |
ttcagtcataaccaatggattagggttagaaccactcatgagaaaccctgccttgtcattcaatccattcattacattaattagcacattttttattcac |
3549414 |
T |
|
| Q |
312 |
tggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgtacactaatttgtctcctatgcttatgtttagaggatttgtt |
411 |
Q |
| |
|
|||||| | |||||| || | ||| |||| ||||||||||||||||| || ||||| ||||||||||||||| | | |||||||| ||||| |
|
|
| T |
3549415 |
tggttgctcaatccaatcttttggtgaccctattgatcatgcataggaatgtacttcatacaccaatttgtctcctatgttaacatttagaggctttgtc |
3549514 |
T |
|
| Q |
412 |
ttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattgggattttctttgtgaaccgttgttgctccttggctcatgtatt |
511 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||||||||||||| || |||||||| |||||| ||||||| || |||||| |||||||||||||||||| |
|
|
| T |
3549515 |
ttcaagaagcttaaatcagtgtcataatttaagccagaaacaaaaactagaacatttggatttgctttgtggactgttgttactccttggctcatgtatt |
3549614 |
T |
|
| Q |
512 |
tttgccaactgcttatgttttgacttggacctcttagttcat |
553 |
Q |
| |
|
| | |||| || ||||||||| |||||||| |||||||| |
|
|
| T |
3549615 |
tgtaccaattgtcattgttttgacctggacctcgtagttcat |
3549656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 3554740 - 3554864
Alignment:
| Q |
38 |
tccatataccaaaaggctcactcgcattactttctttatctctaatatagtaagaaccttgtgcagtccataaagcccaatccaaatcaac-cctagcaa |
136 |
Q |
| |
|
||||||||||||||| ||||||| || || |||| || | ||| |||||||||| ||||||||||| ||| || |||||||||||||| || |||| ||| |
|
|
| T |
3554740 |
tccatataccaaaagtctcactcacaataatttcattttttcttatatagtaagcaccttgtgcagcccacaatgcccaatccaaatccacaccta-caa |
3554838 |
T |
|
| Q |
137 |
gataagctaacatacatgacaagaat |
162 |
Q |
| |
|
|||| || |||||||| ||||||||| |
|
|
| T |
3554839 |
gatatgccaacatacaagacaagaat |
3554864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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