View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_high_8 (Length: 546)
Name: NF15401_high_8
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 246 - 524
Target Start/End: Original strand, 33749648 - 33749937
Alignment:
| Q |
246 |
gagagtagcaagaacaagaagacaagaagatcccaccaacgaatgatcacctgaaggtaaatggtcaaatcagaagtgaaatatcaaaacacactcttta |
345 |
Q |
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| T |
33749648 |
gagagtagcaagaacaagaagacaagaagatcccaccaacgaatgatcacctgaagggaaatggtcaaatcagaagtgaaatatcaaaacacactcttta |
33749747 |
T |
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| Q |
346 |
caccg------agagtgagagtgaactctaaatctaatttcattttcgttccccacctcttatgtggcgctttctccttaaccctcatatttgcaccctc |
439 |
Q |
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| T |
33749748 |
cactgtcactgatagtgagagtgaactctaaatctaatttcattttcgttccccacctcttatgtggcgctttctccttaaccctcatatttgcaccctc |
33749847 |
T |
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| Q |
440 |
aagtctatat--gaagt-----gacatttctcactctctactatatgacccaccacgagacacaaaatgcacacatccaaatcctatgtggc |
524 |
Q |
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| T |
33749848 |
aaatctatatatgaagttgacagacatttctcactctctactat--gacccaccacaagacacaaaatgcacacatccaaatcctatgtggc |
33749937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33749387 - 33749449
Alignment:
| Q |
1 |
aataataaatggtttgattctttcttgtgttgttatagatctacttcgtccatttcgtttaca |
63 |
Q |
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| T |
33749387 |
aataagaaatggcttgattctttcttgtgttgttatagatctacttcgtccatttcgtttaca |
33749449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 33749567 - 33749635
Alignment:
| Q |
110 |
acctattcaaccggttatccatgtgtgaga--gagttgttggccacgtggtccaatatgtgagagagtg |
176 |
Q |
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| T |
33749567 |
acctattcaaccaattacccatgtgtgagagagagttgttggccacgtggtccaatatgtgagagagtg |
33749635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 33748876 - 33748830
Alignment:
| Q |
149 |
gccacgtggtccaatatgtgagagagtgtataatggagagtgcaaaa |
195 |
Q |
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| T |
33748876 |
gccacgtggtccaatatgtgagagagtgtctaatagagagtgtaaaa |
33748830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 538133 - 538211
Alignment:
| Q |
130 |
atgtgtgagagagttgttggccacgtggtccaatatgtgagagagtgtataatggagagtgcaaaaatgattgtcctta |
208 |
Q |
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| T |
538133 |
atgtgagagagtgttgtgggccacatggccctgtatgtgagagagtgtctaatggagagtgtaaaagtgactgtcctta |
538211 |
T |
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