View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15401_high_9 (Length: 526)

Name: NF15401_high_9
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15401_high_9
NF15401_high_9
[»] chr3 (1 HSPs)
chr3 (16-526)||(52036160-52036682)


Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 526
Target Start/End: Original strand, 52036160 - 52036682
Alignment:
Q  16 acaggttcagattaatacaaccatcgatgcatcaaacatgaataatttctacaaccatatgattattttaactacnnnnnnnn--gtctcaagatatagc 113  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||    
T  52036160 acaggttcagattaatacaaccattgatgcatcaaacatgaataatttctacaaccatatgattattttaactacaaaaaaaaaagtctcaagatatagc 52036259  T
Q  114 aa----------ccgtaatttaaaaccatgttatctccgaaaacacttctataaaaattatatcattgcttgagtgttttagctgaaggtgcagcatatc 203  Q
    ||          |||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||    
T  52036260 aaaaggtatgaaccgtaattgaaaaccatgttatctccgaaaacacttctataaaccttatatcattgcttgagtgttttagctgaagatgcagcatatc 52036359  T
Q  204 tagcagagaaaccgcggcctaaagcttcttcgtcgtcctcctcccaactaccatcatcaaaattttgagcatagcttaaaggatcatacctaaaaccacc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52036360 tagcagagaaaccgcggcctaaagcttcttcgtcgtcctcctcccaactaccatcatcaaaattttgagcatagcttaaaggatcatacctaaaaccacc 52036459  T
Q  304 aacggttctcctcttccacggcagcttcaatttgagacgcccaaagcatgaaagcaaccctcctccacctgttttgcttcttctaggagatgatggactt 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52036460 aacggttctcctcttccacggcagcttcaatttgagacgcccaaagcatgaaagcaaccctcctccacctgttttgcttcttctagtagatgatggactt 52036559  T
Q  404 gtttccattgctagctaatttttgagatagatagcttcattgaatgaaaacttagtgttagctctcgtggggtcnnnnnnnattcacaacttctatttta 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  52036560 gtttccattgctagctaatttttgagatagatagcttcattgaatgaaaacttagtgttagctctcgtggggtctttttttattcacaacttctatttta 52036659  T
Q  504 atttggtatggattttaattgtg 526  Q
    |||||||||||||||||| ||||    
T  52036660 atttggtatggattttaagtgtg 52036682  T

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