View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_1 (Length: 893)
Name: NF15401_low_1
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 317 - 893
Target Start/End: Complemental strand, 35476598 - 35476022
Alignment:
| Q |
317 |
ttgagatgtttataaatgaaattcttaaattcttaaatttaccttgagttgtgccaatgctagaggatgttcggtgagaaacttgaccgcaaatgtcatt |
416 |
Q |
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| T |
35476598 |
ttgagatgtttataaatgctatccttaaattcttaaatttaccttgagttgtgccaatgctagaggatgttcggtgagaaacttgaccgcgaatgtcatt |
35476499 |
T |
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| Q |
417 |
atggtagaggtggtttcataaccggcgacgagcaatgccaacatgaaatcgactatttgttcattggaaaagtggtcgccagaggccaacaatgcaccta |
516 |
Q |
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| T |
35476498 |
atggtagaggtggtttcatatccggcgacgagtaatgccaacatgaaatcgactatttgttcattggaaaagtggtcgccagatgccaacaatgcaccta |
35476399 |
T |
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| Q |
517 |
gcatgtcagtttttgtctcccccattacactttcttttcttctctgcctcacaatcaatgtcaatgcctctgctaccttcgttcttgcctacataattga |
616 |
Q |
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| T |
35476398 |
gcatgtcagtttttgtctcccccattacactttcttttcttctctgcctcacaatcaatgtcaatgcctctgctaccttcgttcttgcctacataattga |
35476299 |
T |
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| Q |
617 |
acataatggctctaataattacgaactgagctacacttacggacttaataaatgcctatcttaaacttttgtaacaagtgcacgtgtgttaccttgattg |
716 |
Q |
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| T |
35476298 |
acataatggctctgatagttacaaactgagctacacttacggacttaataaatgtctaccttaaacttttgtaacaagtgcacgtgtgttaccttgattg |
35476199 |
T |
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| Q |
717 |
ctctgcggtaggtactagagaggagtggtaagggaagggtaaaaaatccttcaatcacgagaacgtactctttccttagagtctcagtccattcacctgg |
816 |
Q |
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| T |
35476198 |
ctctgcggtaggtactagagaggagtggtaagggaagggtaaaaaatccttcaatcacgagaacgtactctttccttagagtctcagtccattcacctgg |
35476099 |
T |
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| Q |
817 |
atcaaaactcatcagctgcttcactgtcaactcaaacgttatctgcaagtaaccaaacaaaagcaacaatatggtaa |
893 |
Q |
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| T |
35476098 |
atcaaaactcatcagctgcttcactgtcaactcaaacgttatctgcaagtaaccaaacaaaagcaacaatatggtaa |
35476022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 35476902 - 35476637
Alignment:
| Q |
13 |
aatataggtagggtgggggaagtggtgaggaacagataacgaaaatgaggtttgaaaggaaaccacaccacatgaacgatggggatggacatggacacgg |
112 |
Q |
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| T |
35476902 |
aatataggtagggtgggggaagtggtgagggacagataacgaaaatgaggtttgaaaggaaaccacaccacatgaacgatggggatggacatggacacgg |
35476803 |
T |
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| Q |
113 |
tggtggggtaattctataagcatggacctatatctatatatggtccactaccctagctaaataatactataaaacaaatgtgatgtattagtttgaccaa |
212 |
Q |
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| T |
35476802 |
tggtggggtaattctataagcatggacctatatctatatatggtccactaccctagctaaataatactacaaaacaaatgtgatgtattagtttgaccaa |
35476703 |
T |
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| Q |
213 |
aaaatatgcaccaacaatatacnnnnnnncttttagaaatgctaacttgtatccttaaggcacaag |
278 |
Q |
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| T |
35476702 |
aaaatatgcaccaacaatatactttatttcttttagaaatgctaacttgtgtccttaaggcacaag |
35476637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 707 - 864
Target Start/End: Complemental strand, 31553710 - 31553553
Alignment:
| Q |
707 |
accttgattgctctgcggtaggtactagagaggagtggtaagggaagggtaaaaaatccttcaatcacgagaacgtactctttccttagagtctcagtcc |
806 |
Q |
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| T |
31553710 |
accttgatggctctacggtaggtggtagagaaaagaggaaatgggagagtgaaaaacccttcaattacaagcatgtactctttccttaaactctcagtcc |
31553611 |
T |
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| Q |
807 |
attcacctggatcaaaactcatcagctgcttcactgtcaactcaaacgttatctgcaa |
864 |
Q |
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| T |
31553610 |
attcatctggatcaaaactcatcagctgtttaactgtcaactcaaatgttatctgcaa |
31553553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 356 - 607
Target Start/End: Complemental strand, 31554271 - 31554017
Alignment:
| Q |
356 |
taccttgagttgtgccaatgctagaggatgttcggtgagaaacttgaccgcaaatgtcattatggtagaggtggtttcataaccggcgacgagcaatgcc |
455 |
Q |
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| T |
31554271 |
taccttgagttgtgccaaggctaaaggagtttcagtgagaaatttgatggcaagagtcataattgtagaagtagtttcataaccagcaacgagcaaagcc |
31554172 |
T |
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| Q |
456 |
aacatgaaatcgactatttgttcattggaaaagtggtcgccagaggccaacaatgcacctagcatgtcagtttttgtctc---ccccattacactttctt |
552 |
Q |
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| T |
31554171 |
aacataaaatcaactatttcctcgtttgagaactgttcaccagatgccaacaatgctccaagcatgtcattctttttctctatgcctatttcattctctt |
31554072 |
T |
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| Q |
553 |
ttcttctctgcctcacaatcaatgtcaatgcctctgctaccttcgttcttgccta |
607 |
Q |
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| T |
31554071 |
ttctcctctgcctcactactagtgtcagtgcctctgccacctttgttcttgccta |
31554017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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