View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_13 (Length: 512)
Name: NF15401_low_13
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Original strand, 19462845 - 19463328
Alignment:
| Q |
19 |
gaaaactgtttgactttatttatatcttgttatagaaataacttgtacatcagtacttacaggataaacgataattaaaccgtttatctagacagggcct |
118 |
Q |
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| T |
19462845 |
gaaaactgtttgactttatttatatcttgttatagaaataacttgtacatcagtacttacacgataaacgataattaaaccgtttatctagacagggcct |
19462944 |
T |
|
| Q |
119 |
tagtttatctgagttacatgatattaatatccttggttgttgaatcgtcaatggtgagtctatgatgctctttctaaaacttctgtataatattcaaata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19462945 |
tagtttatctgagttacatgatattaatatccttggttgttgaatcttcaatggtcagtctatgatgctctttctaaaatttctgtataatattcaaata |
19463044 |
T |
|
| Q |
219 |
tttcaacttggtttagcttgcttactttgcagatagtttcacagcttgataatatttatgcatgagtttcttgttgaaaattatgtaccaagttatagta |
318 |
Q |
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| T |
19463045 |
tttcaacttggtttagcttgcttactttgcagatagtttcacagcttgataatatttatgcatgagtttcttgttgaaaattatgtaccaagttatagta |
19463144 |
T |
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| Q |
319 |
gttgaaatgaaaacaaattaattcgatgaattttccagttgcaccagcagatggaaaatgggaattatgaaagtgagacatctattttgtcagctgagga |
418 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19463145 |
gttgaaatgaaaacaaattaattcgatgaactttccagttgcaccagcagatggaaaatgggaattatgaaagtgagacatctattttgtcagctgagga |
19463244 |
T |
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| Q |
419 |
aattgaagagatagttcagaggaaggtgacccctctgtttagcccaagttagtcccagaatctgcctttatcatggaccctttg |
502 |
Q |
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| T |
19463245 |
gattgaagagatagttcaaaggacggtgacccctctgtttagcccaagttagacccagaatctgcctttatcatggaccctttg |
19463328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 10190786 - 10190300
Alignment:
| Q |
19 |
gaaaactgtttgactttatttatatcttgttatagaaataacttgtacatcagtacttacaggataaacgataattaaaccgtttatctagacagggcct |
118 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10190786 |
gaaaacagtttgactttatttctatcttgttatagaaataactagtacattagtacttacatgataaacgataattaaaccgtttatctagacagggcct |
10190687 |
T |
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| Q |
119 |
tagtttatctgagttacatga-------------------tattaatatccttggttgttgaatcgtcaatggtgagtctatgatgctctttctaaaact |
199 |
Q |
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| T |
10190686 |
tagtttatctgagttacattacttatattttcattgaaattattaatatccttggttgttgaatcatcaatggtcagtctatgtttctctttctaaaact |
10190587 |
T |
|
| Q |
200 |
tctgtataatattcaaatatttcaacttggtttagcttgcttactttgcagatagtttcacagcttgataatatttatgcatgagttt--cttgttgaaa |
297 |
Q |
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| T |
10190586 |
tatgtataatattcaaatatttcaacttggtttagcttactaactttgcagatagtttcacagcttgacaatatttctgcatgagtttttcttgctgaaa |
10190487 |
T |
|
| Q |
298 |
attatgtaccaagttatagtagttgaaatgaaaacaaattaattcgatgaattttccagttgcaccagcagatggaaaatgggaattatgaaagtgagac |
397 |
Q |
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|||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10190486 |
attatgtaacaagttaaagttgttgaaatgaaaacaaattaattcgatgaattttccagttgcaccagcagatggaaaatgggaattatgaaagtgagac |
10190387 |
T |
|
| Q |
398 |
atctattttgtcagctgaggaaattgaagagatagttcagaggaaggtgacccctctgtttagcccaagttagtcccagaatctgcc |
484 |
Q |
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| T |
10190386 |
atccattttgtcagctgaggagattgaagagatagttcaaaggaaggttacccctctgtttagcccaagttagaccctgaatctgcc |
10190300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 18704124 - 18704173
Alignment:
| Q |
28 |
ttgactttatttatatcttgttatagaaataacttgtacatcagtactta |
77 |
Q |
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|||||||||||||| | |||||||||||||||||| ||||| || ||||| |
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| T |
18704124 |
ttgactttatttatcttttgttatagaaataacttatacataagaactta |
18704173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 4191731 - 4191660
Alignment:
| Q |
19 |
gaaaactgtttgactttatttatatctt--gttatagaaataacttgtacatcagtacttacaggataaacg |
88 |
Q |
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|||||| |||||||||||||| |||||| |||||||||||| ||| ||||| || ||||| | |||||||| |
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| T |
4191731 |
gaaaacagtttgactttatttttatcttttgttatagaaatagcttatacataagcacttatatgataaacg |
4191660 |
T |
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