View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15401_low_14 (Length: 510)

Name: NF15401_low_14
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15401_low_14
NF15401_low_14
[»] chr5 (17 HSPs)
chr5 (20-497)||(8528475-8528971)
chr5 (20-213)||(8535333-8535526)
chr5 (20-327)||(9074801-9075109)
chr5 (20-213)||(8677637-8677830)
chr5 (45-213)||(1600386-1600554)
chr5 (221-330)||(8535183-8535294)
chr5 (20-213)||(8644044-8644237)
chr5 (121-213)||(8548273-8548365)
chr5 (20-211)||(8636701-8636892)
chr5 (420-494)||(8535045-8535122)
chr5 (221-374)||(8548409-8548562)
chr5 (122-177)||(8641242-8641297)
chr5 (62-106)||(2856974-2857018)
chr5 (62-106)||(2874584-2874628)
chr5 (122-210)||(9003305-9003393)
chr5 (225-294)||(1600601-1600670)
chr5 (62-106)||(2845147-2845191)
[»] chr4 (1 HSPs)
chr4 (20-497)||(9442625-9443132)
[»] chr7 (2 HSPs)
chr7 (21-188)||(35779694-35779861)
chr7 (20-213)||(48361930-48362128)
[»] scaffold0627 (1 HSPs)
scaffold0627 (118-213)||(4492-4587)
[»] chr1 (1 HSPs)
chr1 (20-213)||(5130638-5130832)
[»] chr6 (1 HSPs)
chr6 (120-213)||(16716179-16716272)


Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Complemental strand, 8528971 - 8528475
Alignment:
Q  20 ctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaatta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528971 ctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaatta 8528872  T
Q  120 ttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaatttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528871 ttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaatttt 8528772  T
Q  220 a----------------aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtt 303  Q
    |                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528771 atttttattggcaattgaatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtt 8528672  T
Q  304 tcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaac 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528671 tcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaac 8528572  T
Q  404 gacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttagttctt 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||    
T  8528571 gacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatgatgttgtatatatttgttatatttttagttctt 8528475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 8535526 - 8535333
Alignment:
Q  20 ctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaatta 119  Q
    |||||||||||| ||||||||||| ||||||||||| |||||| |||||||| |||||||| ||| |||||||||||||| | |||||| |   |||||     
T  8535526 ctgccatattgttatatcattcctgcaattgttttatctactatgaacctgagaaatatggattcgaagtttttcgaatttacgggagtagttcaaattt 8535427  T
Q  120 ttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  8535426 ttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggtgacaatattgaggttctgaatatccactcaaggtaa 8535333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 9074801 - 9075109
Alignment:
Q  20 ctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaatta 119  Q
    |||||||||||| |||||||| || ||||||||||| || ||| |||||||| |||||||| ||||||||||||||||||||||||||||    ||| |     
T  9074801 ctgccatattgttatatcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagtttttcgaattcatgggagtcattcaaagtt 9074900  T
Q  120 ttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa-aattt 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||||| ||| |    
T  9074901 ttttgaagtaatcccacatattccaagtctaatttcattgaaggatgtcttgaaaggagacaatatcgaggtgctgaatatccactcaaggtaagaatgt 9075000  T
Q  219 taaatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgtta-cact 317  Q
        ||| ||  || ||  |||| ||||||||||||||||| ||| ||||||| ||  |||| |||||||||||| | || |||||| ||||||| ||||    
T  9075001 agcttctaatactttat-tttccgtacaagtcatagtaattaattttaatcataagatgagttttcaaagggactcgagtgagtttcttatgttaccact 9075099  T
Q  318 tatattttaa 327  Q
    ||||||||||    
T  9075100 tatattttaa 9075109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 8677830 - 8677637
Alignment:
Q  20 ctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagt-cggataaatt 118  Q
    |||||||||||| ||||||||||| ||||||| ||| |||||| ||||| || ||| |||| |||||||||||||||||||| || | | |     ||||    
T  8677830 ctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatggtttcaaagtttttcgaattcacggcacttcttccgaatt 8677731  T
Q  119 attttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 213  Q
     | ||||| |||| |||||  ||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  8677730 -tgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtaa 8677637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 45 - 213
Target Start/End: Original strand, 1600386 - 1600554
Alignment:
Q  45 caattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattcca 144  Q
    ||||||||| | ||| || |||||||  |||||| | | ||||| ||||  |||||||||||||||   | ||| ||||||| ||||||| || ||||||    
T  1600386 caattgtttaatctattatgaacctgcgaaatatcgatgcaaagcttttgaaattcatgggagtcgttcagattgttttgaaataatcccgcatattcca 1600485  T
Q  145 agtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 213  Q
    ||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||||    
T  1600486 agtctaatttcattgaaggatgtcttgaaaggggacaatattgaggtgctgaatatccactcaaggtaa 1600554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 8535294 - 8535183
Alignment:
Q  221 aatctgatggttgatgcttccttacaa-gtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgtta-cactt 318  Q
    |||||||||||||||||| |||||||| |||||||||||||||| ||||||| || |||||||||||||| |||| |||||||||||||||||| || ||    
T  8535294 aatctgatggttgatgctcccttacaaagtcatagtaattgattttaatcataagacgagtattcaaaggaacttctgtaagtttcctatgttaccagtt 8535195  T
Q  319 atattttaaact 330  Q
    ||||||||||||    
T  8535194 atattttaaact 8535183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 8644237 - 8644044
Alignment:
Q  20 ctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagt-cggataaatt 118  Q
    |||||||||||| ||||||||||| ||||||| ||| |||||| |||||  | ||| |||  |||||||||||||||||||| || | | |     ||||    
T  8644237 ctgccatattgttatatcattcctgcaattgtcttatctactatgaacccaagaaacatgctttcaaagtttttcgaattcacggcatttcttccgaatt 8644138  T
Q  119 attttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 213  Q
     | ||||| |||| |||||  ||||||||||||| ||||||||||||||| ||||||||| ||||| |||| | |||||||||||||||||||||    
T  8644137 -tgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggtaa 8644044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 8548273 - 8548365
Alignment:
Q  121 tttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 213  Q
    ||||||||||| | ||| |||||||||||||| ||||||||||||||  ||||||||| |||||||||||| |||||||||||||||| ||||    
T  8548273 tttgaagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaa 8548365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 8636892 - 8636701
Alignment:
Q  20 ctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaatta 119  Q
    |||||||||||| ||||||||||| ||||||| ||| |||||| ||||| || |||  ||| |||||||||||| ||||||| || | |       | |     
T  8636892 ctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacttggtttcaaagtttttagaattcaaggcacttcttccgagtt 8636793  T
Q  120 ttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggt 211  Q
    | ||||| |||| |||||  ||||||||||||| ||||||||||||||  ||||||||| |||||| ||||| |||||||||||||||||||    
T  8636792 tgttgaaataattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggt 8636701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 494
Target Start/End: Complemental strand, 8535122 - 8535045
Alignment:
Q  420 gttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttagtt 494  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||||||   ||| |||||||||||||| |||||||    
T  8535122 gttgtgatgtttcgtcaatcatttgcttttacaactaatatatttatgaagttgtttatatttgttataaatttagtt 8535045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 221 - 374
Target Start/End: Original strand, 8548409 - 8548562
Alignment:
Q  221 aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttac-actta 319  Q
    |||||||||||||||||| || || || ||||||||||| ||| ||||||| ||  |||||||||||||| | ||||| | |||  | ||||||  ||||    
T  8548409 aatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgctta 8548508  T
Q  320 tattttaaacttactatttttccattccatttggagaaaagaagacatgttgtta 374  Q
    || ||||||||| |||||||  ||||| ||||||| ||| |||| | ||||||||    
T  8548509 ta-tttaaacttcctattttggcattctatttggataaaggaaggcttgttgtta 8548562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 8641297 - 8641242
Alignment:
Q  122 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaagga 177  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||||  ||||||||    
T  8641297 ttgaagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaagga 8641242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 2856974 - 2857018
Alignment:
Q  62 acgaacctgaaaaatatgggttcaaagtttttcgaattcatggga 106  Q
    |||||||||| ||| ||||||||||||||||||||||||| ||||    
T  2856974 acgaacctgagaaacatgggttcaaagtttttcgaattcaaggga 2857018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 2874584 - 2874628
Alignment:
Q  62 acgaacctgaaaaatatgggttcaaagtttttcgaattcatggga 106  Q
    |||||||||| ||| ||||||||||||||||||||||||| ||||    
T  2874584 acgaacctgagaaacatgggttcaaagtttttcgaattcaaggga 2874628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 9003393 - 9003305
Alignment:
Q  122 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaagg 210  Q
    |||||||||| ||||| |||||||||||||| ||||||||||| | | | || |||| |||| |||||||  ||||| || ||||||||    
T  9003393 ttgaagtaattccacatattccaagtctaatctcattgaaggaggctgtaaatggagacaatgttgaggtgttgaatgtctactcaagg 9003305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 1600601 - 1600670
Alignment:
Q  225 tgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggactt 294  Q
    ||||||| |||| | || ||||||||||||||||| ||| ||||||| || | ||| |||||||||||||    
T  1600601 tgatggtcgatgttcccatacaagtcatagtaattaattttaatcataagacaagttttcaaagggactt 1600670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 2845147 - 2845191
Alignment:
Q  62 acgaacctgaaaaatatgggttcaaagtttttcgaattcatggga 106  Q
    |||||||||| ||| ||| ||||||||||||||||||||| ||||    
T  2845147 acgaacctgagaaacatgagttcaaagtttttcgaattcaaggga 2845191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Complemental strand, 9443132 - 9442625
Alignment:
Q  20 ctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaatta 119  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9443132 ctgccatattgtcatatcattccttcaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggaaaaatta 9443033  T
Q  120 ttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaatttt 219  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443032 ttttgaagtaatccaacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaatttt 9442933  T
Q  220 a----------------aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtt 303  Q
    |                |||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  9442932 atttttattggcaattgaatctgatggttgatgcttctttacaagtcatagtaattgattgtaatcatgagatgagtattcaaagggacttgtgtaagtt 9442833  T
Q  304 tcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaac 403  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  9442832 tcctatgttacacttatattttaaacttactattttgccattccatttggagaaaagaaaacatgttgttaggttacttcggttgatatattctcacaac 9442733  T
Q  404 -----------gacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattt 489  Q
               ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||| |||    
T  9442732 gacatgttggagacatgttggagaaaggttgtgatgtttcgtcaatcatttgctttcgcagctaatatatttatgatgttgtatatatttgttatatttt 9442633  T
Q  490 tagttctt 497  Q
    ||||||||    
T  9442632 tagttctt 9442625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 35779861 - 35779694
Alignment:
Q  21 tgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaattat 120  Q
    ||||||||||| ||||||||| | ||||||||||| |||||  |||||||| |||||||| | ||||||||||||||||| ||||| |||   ||| | |    
T  35779861 tgccatattgttatatcattcatgcaattgttttatctactttgaacctgagaaatatggatacaaagtttttcgaattcgtgggactcgttcaaaatct 35779762  T
Q  121 tttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattga 188  Q
     |||||||||| ||||| |||||||||||||| ||||||||||||||| | ||||||| |||||||||    
T  35779761 gttgaagtaattccacatattccaagtctaatatcattgaaggatgttgtaaaaggagacaatattga 35779694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 48361930 - 48362128
Alignment:
Q  20 ctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaatta 119  Q
    |||||||||||| ||||||||||| | |  |||| | ||| || |||||||| |||||| | | ||||| |||||  ||||| ||||||||   |  ||     
T  48361930 ctgccatattgttatatcattcctacgaccgtttaatctattatgaacctgagaaatatagatgcaaagcttttcatattcacgggagtcgttcaggttc 48362029  T
Q  120 ttttgaagtaatcccacacattccaagtctaat-----ttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 213  Q
    |||||||||||||||||| ||||||||||||||     ||||||||||||||| ||||||||||  ||||| |||||  ||||| ||||||||||||||    
T  48362030 ttttgaagtaatcccacatattccaagtctaatttaatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaa 48362128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 4587 - 4492
Alignment:
Q  118 tattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 213  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||||||   ||||||||| ||||||||||||  ||||||||||||||||||||    
T  4587 tattttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggtaa 4492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 5130832 - 5130638
Alignment:
Q  20 ctgccatattgtcatatcattcctccaattgttttacct-actacgaacctgaaaaatatgggttcaaagtttttcgaattcatgggagtcggataaatt 118  Q
    |||||||||||  ||||||||||| ||| ||||||  || || | ||||| || |||||| | | ||||||||||||||||||||||| | |   |||      
T  5130832 ctgccatattgctatatcattcctgcaactgttttgtcttaccatgaaccggagaaatatagatacaaagtttttcgaattcatgggacttgttcaaaaa 5130733  T
Q  119 attttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 213  Q
    |  |||||||||| ||||| ||| |||||||||||||| | |||||| || ||||||||| |||||||||||| |||||||| ||||||||||||    
T  5130732 agattgaagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaaggagacaatattgaggtgctgaatattcactcaaggtaa 5130638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 213
Target Start/End: Complemental strand, 16716272 - 16716179
Alignment:
Q  120 ttttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 213  Q
    |||| ||||||| ||||| |||||||||||||| |||||||||||||   |||||||||  |||||||||||  ||||||||||||||||||||    
T  16716272 ttttaaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaatatccactcaaggtaa 16716179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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