View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_15 (Length: 508)
Name: NF15401_low_15
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 6495868 - 6495601
Alignment:
| Q |
20 |
ggtaagcctaacttgcactgtgccagaaaaagtgcatgatgaaaaattaggtattaagtgaagttcatannnnnnnggaattgcaaaattaggtaatctt |
119 |
Q |
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| T |
6495868 |
ggtaagcctaacttgcactgtgccagaaaaagtgcatgatgaaaaattaggtattaagtgaagttcatattgttttggaattgcaaaattaggtaatctt |
6495769 |
T |
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| Q |
120 |
gtttggcctttgaattcatctatgatatgtttcttttccannnnnnnccaaagagagttcactctaaatttcttttatttccaagtgaaagattacttat |
219 |
Q |
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| T |
6495768 |
gtttggcctttgaattcatctatgatatgtttcttttccatttttttccaaagagagttcactctaaatttcttttatttccaagtgaaagattacttat |
6495669 |
T |
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| Q |
220 |
aacattttcttttcaaaggctaaagtattatattatacatggaaaattataagtcataacattacaag |
287 |
Q |
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| T |
6495668 |
aacattttcttttcaaaggctaaagtattatattatacatggaaaattataagtcataacattacaag |
6495601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 328 - 478
Target Start/End: Complemental strand, 6495579 - 6495422
Alignment:
| Q |
328 |
tattcaattgattgaaacgttgaattgggttttatggttatcgttttcctccttggatgattagtggttgcaa-------gttggaatatcttttaacga |
420 |
Q |
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| T |
6495579 |
tattccattgattgaaacgttgaattgggttttatggttatcgttttcctccttagatgattagtggttgcaagttgtgagttggaatatcttttaacaa |
6495480 |
T |
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| Q |
421 |
aaacttttagcattatttcatttgttattttgtaatgcatcactatttagtataatct |
478 |
Q |
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| T |
6495479 |
aaacttttagtattatttcatttgttattttgtaatgcatcactgtttattataatct |
6495422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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