View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15401_low_16 (Length: 506)

Name: NF15401_low_16
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15401_low_16
NF15401_low_16
[»] chr4 (10 HSPs)
chr4 (25-497)||(19147193-19147660)
chr4 (26-123)||(31647691-31647788)
chr4 (25-99)||(3319295-3319369)
chr4 (25-95)||(47397603-47397673)
chr4 (25-89)||(38320164-38320228)
chr4 (23-73)||(31241995-31242045)
chr4 (41-123)||(51759165-51759247)
chr4 (30-82)||(54248992-54249044)
chr4 (30-94)||(20775070-20775135)
chr4 (46-94)||(20542717-20542765)
[»] chr7 (11 HSPs)
chr7 (25-123)||(45907079-45907177)
chr7 (30-76)||(8117494-8117540)
chr7 (25-75)||(41434719-41434769)
chr7 (25-89)||(16861681-16861745)
chr7 (23-94)||(36636051-36636122)
chr7 (25-81)||(22035744-22035800)
chr7 (30-95)||(3624274-3624340)
chr7 (38-72)||(16563528-16563562)
chr7 (38-72)||(16602100-16602134)
chr7 (41-89)||(21798802-21798849)
chr7 (38-81)||(19689512-19689554)
[»] scaffold0034 (1 HSPs)
scaffold0034 (25-94)||(22469-22538)
[»] chr2 (11 HSPs)
chr2 (25-122)||(37913049-37913146)
chr2 (25-122)||(19889716-19889813)
chr2 (25-108)||(4141625-4141707)
chr2 (28-94)||(18243787-18243853)
chr2 (39-123)||(11610469-11610553)
chr2 (31-94)||(21646528-21646591)
chr2 (30-95)||(23788456-23788520)
chr2 (28-75)||(29868249-29868297)
chr2 (30-75)||(23760642-23760687)
chr2 (28-81)||(43131807-43131860)
chr2 (53-96)||(36087362-36087406)
[»] chr5 (9 HSPs)
chr5 (30-94)||(7609590-7609654)
chr5 (25-94)||(2611194-2611263)
chr5 (25-94)||(14863335-14863404)
chr5 (25-94)||(21052673-21052742)
chr5 (25-123)||(11320096-11320193)
chr5 (38-94)||(31619318-31619374)
chr5 (41-122)||(35185229-35185308)
chr5 (23-94)||(12187182-12187253)
chr5 (30-95)||(22180305-22180370)
[»] chr1 (20 HSPs)
chr1 (30-94)||(31884510-31884574)
chr1 (25-123)||(26855872-26855969)
chr1 (29-123)||(27742524-27742617)
chr1 (25-94)||(40391263-40391332)
chr1 (25-94)||(50127393-50127462)
chr1 (28-108)||(18910454-18910533)
chr1 (29-94)||(44109120-44109184)
chr1 (30-75)||(13534547-13534592)
chr1 (20-96)||(50468847-50468923)
chr1 (20-94)||(30627655-30627730)
chr1 (44-94)||(16963639-16963689)
chr1 (25-75)||(19066878-19066928)
chr1 (25-75)||(19114768-19114818)
chr1 (26-68)||(33827871-33827913)
chr1 (26-68)||(33840052-33840094)
chr1 (25-70)||(48282936-48282981)
chr1 (25-61)||(20471377-20471413)
chr1 (25-61)||(20560124-20560160)
chr1 (28-75)||(15419699-15419746)
chr1 (35-80)||(33148912-33148957)
[»] chr3 (15 HSPs)
chr3 (25-94)||(15671162-15671231)
chr3 (25-94)||(44291275-44291344)
chr3 (26-86)||(35322016-35322076)
chr3 (25-119)||(42163652-42163746)
chr3 (25-123)||(43652514-43652612)
chr3 (25-123)||(43862911-43863009)
chr3 (35-96)||(2379659-2379721)
chr3 (28-94)||(27143998-27144064)
chr3 (39-103)||(43014635-43014699)
chr3 (30-80)||(17560721-17560771)
chr3 (25-70)||(44041370-44041415)
chr3 (38-94)||(49710944-49711000)
chr3 (25-75)||(32720566-32720616)
chr3 (25-67)||(49419097-49419139)
chr3 (31-75)||(17109586-17109630)
[»] chr8 (14 HSPs)
chr8 (25-89)||(29795509-29795573)
chr8 (25-89)||(30924836-30924900)
chr8 (25-75)||(20821908-20821958)
chr8 (25-94)||(39065579-39065648)
chr8 (30-94)||(41675721-41675785)
chr8 (26-100)||(28462590-28462663)
chr8 (32-89)||(39534190-39534247)
chr8 (25-75)||(900279-900329)
chr8 (25-75)||(37919417-37919467)
chr8 (41-94)||(38362265-38362318)
chr8 (31-94)||(39209414-39209476)
chr8 (28-98)||(43917581-43917652)
chr8 (25-75)||(14110659-14110708)
chr8 (30-82)||(9791910-9791962)
[»] scaffold0068 (1 HSPs)
scaffold0068 (25-122)||(51983-52080)
[»] chr6 (7 HSPs)
chr6 (30-89)||(4803159-4803218)
chr6 (25-123)||(17506234-17506334)
chr6 (25-72)||(21809851-21809898)
chr6 (23-81)||(10008205-10008263)
chr6 (41-118)||(19418569-19418647)
chr6 (41-120)||(10252938-10253018)
chr6 (42-121)||(7592697-7592777)
[»] scaffold0117 (1 HSPs)
scaffold0117 (25-95)||(16875-16945)
[»] scaffold1372 (1 HSPs)
scaffold1372 (28-77)||(1330-1379)
[»] scaffold0006 (1 HSPs)
scaffold0006 (25-94)||(38800-38869)
[»] scaffold0886 (1 HSPs)
scaffold0886 (25-97)||(1150-1222)
[»] scaffold0078 (1 HSPs)
scaffold0078 (30-75)||(912-957)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 25 - 497
Target Start/End: Original strand, 19147193 - 19147660
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcctn 124  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || | |    |||||||||||||     
T  19147193 gtcactttttatcaaataataattacattacttattaataaaaacttacttcttttggtgcttaatcaatatcccaaaaatattgattaacattctccta 19147292  T
Q  125 nnnnnntagtccctctccctaaattaacacgtgtacatctgacgtagacatatatttgtatcacttaacacttttcttttaagggg-tccttagcacatt 223  Q
          ||||| ||||||||||| ||||||      ||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  19147293 aaaaaatagtctctctccctaaagtaacac------atctggcgtagacatatatttgtatcacttagcacttttcttttaagggggtccttagcacatt 19147386  T
Q  224 tgattaattatttaaactagtttcaactttcaataatatttggaacattttgtcnnnnnnnnnnnnnnggaacatgtataaattcctttctcactttggg 323  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||    
T  19147387 agattaattatttaaactagtttcaactttcaataatatttggaacattttgtctttttttcttttttggaacatgtataaattcctttctcactttggg 19147486  T
Q  324 cgtaaggtcccgtatggcgatcnnnnnnnaacccaaatgaggatctttgttaatgcagtcaaacggcatgcaaaaaatttgaaatagatatatcaatttt 423  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||  | |||||||||||||    
T  19147487 cgtaaggtcccgtatggcgatttttttttaacccaaatgaggatctttgttaatgcagtcaaaccgcatgtaaaaaatttgaaccaaatatatcaatttt 19147586  T
Q  424 tgttaaccaattttccttattttttaaccaaatatttgttaagaaatataaagaagttttatcttgagaataat 497  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19147587 tgttaaccaatattccttattttttaaccaaatatttgttaagaaatttaaagaagttttatcttgagaataat 19147660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 31647788 - 31647691
Alignment:
Q  26 tcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcct 123  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| | ||  | |||| ||||||||||||||    
T  31647788 tcactttttatcaagtaataattacattactttttaataaaaacttatttcttttggtgcttaaccaatacctcgggggcaccggttaacattctcct 31647691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 3319295 - 3319369
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatccc 99  Q
    |||| |||| ||||||||||||||| ||||| |||||||||||| ||| ||||||||||||||||||||| ||||    
T  3319295 gtcatttttcatcaaataataattatattaccttttaataaaaatttatttcttttgatgcttaatcaatgtccc 3319369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 47397673 - 47397603
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaata 95  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||| ||||||| |||||    
T  47397673 gtcactttttatcaaataataattatattacttttaaataaaaatttactacttttggtgcttaaccaata 47397603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 38320164 - 38320228
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaa 89  Q
    ||||||| |||| || |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  38320164 gtcacttcttattaagtaataattacattactttttaataaaaacttactttatttgatgcttaa 38320228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 31241995 - 31242045
Alignment:
Q  23 cggtcactttttatcaaataataattacattactttttaataaaaacttac 73  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  31241995 cggtcactttttattaaataataattacattactttttaataaaaatttac 31242045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 51759247 - 51759165
Alignment:
Q  41 taataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcct 123  Q
    |||||| ||||||| ||||||||||||||||||||| |||||| |||||||||  | | | || ||| |||||||||||||||    
T  51759247 taataactacattattttttaataaaaacttacttcatttgatacttaatcaacgttcaggaggcactcgttaacattctcct 51759165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 54249044 - 54248992
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttacttcttttga 82  Q
    |||||||||| | ||||||||| || |||||||||||||||||||||||||||    
T  54249044 tttttatcaagtgataattacaatattttttaataaaaacttacttcttttga 54248992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 20775135 - 20775070
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttacttctttt-gatgcttaatcaat 94  Q
    |||| |||||||||| ||||||| ||||||| |||||||||||||| |||| ||||||||| ||||    
T  20775135 ttttgatcaaataattattacataactttttcataaaaacttacttgttttggatgcttaaccaat 20775070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 20542717 - 20542765
Alignment:
Q  46 attacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    |||| |||||||||||||||||||||| |||||||| ||||||| ||||    
T  20542717 attatattactttttaataaaaacttaattcttttggtgcttaaccaat 20542765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 45907079 - 45907177
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcct 123  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||  |||||  ||||||||||||||    
T  45907079 gtcactttttatcaagtaataattacattactttttaataaaaacttacttctttttatgcttaaccaatatcccggggacactggttaacattctcct 45907177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 8117494 - 8117540
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttacttc 76  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  8117494 tttttattaaataataattacattactttttaataaaaacttacttc 8117540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 41434769 - 41434719
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttactt 75  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  41434769 gtcactttttatcaaataataattacattattttttaataaaaatttactt 41434719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 16861745 - 16861681
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaa 89  Q
    |||| ||||||| ||||| |||||||||||||||||||||||| |||| |||||||| |||||||    
T  16861745 gtcattttttattaaatattaattacattactttttaataaaaccttatttcttttggtgcttaa 16861681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 36636051 - 36636122
Alignment:
Q  23 cggtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    ||||||| |||||| || |||||||||||||| ||||||||||||||||||||  |||| ||||||| ||||    
T  36636051 cggtcaccttttattaagtaataattacattattttttaataaaaacttactttatttggtgcttaaccaat 36636122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 22035800 - 22035744
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttg 81  Q
    |||||||||||  || |||||||||||||| ||||||||||||||||||||| ||||    
T  22035800 gtcactttttaataagtaataattacattattttttaataaaaacttacttcatttg 22035744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 3624274 - 3624340
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttacttcttttg-atgcttaatcaata 95  Q
    ||||||||||||||| ||||||  |||||||||||||| |||||||| |||| |||||||| |||||    
T  3624274 tttttatcaaataattattacaccactttttaataaaatcttacttcctttgaatgcttaaccaata 3624340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 16563528 - 16563562
Alignment:
Q  38 aaataataattacattactttttaataaaaactta 72  Q
    |||||||||||||||||||||||||||||||||||    
T  16563528 aaataataattacattactttttaataaaaactta 16563562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 16602134 - 16602100
Alignment:
Q  38 aaataataattacattactttttaataaaaactta 72  Q
    |||||||||||||||||||||||||||||||||||    
T  16602134 aaataataattacattactttttaataaaaactta 16602100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 21798849 - 21798802
Alignment:
Q  41 taataattacattactttttaataaaaacttacttcttttgatgcttaa 89  Q
    ||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  21798849 taataattacattacttcttaataaaaa-ttacttcttttggtgcttaa 21798802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 19689554 - 19689512
Alignment:
Q  38 aaataataattacattactttttaataaaaacttacttcttttg 81  Q
    |||||||||||||||||||||||||| |||||||||||| ||||    
T  19689554 aaataataattacattactttttaat-aaaacttacttcatttg 19689512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 22469 - 22538
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  22469 gtcactttttatcaaataataattacattactctttaataaaaacttacttcttttggtgcttaaccaat 22538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 37913049 - 37913146
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcc 122  Q
    ||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |||  | ||||  |||||||||||||    
T  37913049 gtcactttttatcaagtaataatcacattaatttttaataaaaacttacttcttttgatgcttaaccaataccccagaaacacgggttaacattctcc 37913146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 19889813 - 19889716
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcc 122  Q
    ||||| |||||| || ||||||||||||||||||||||| |||||||||||| |||||||||||| ||||  ||||||| |||   ||||||||||||    
T  19889813 gtcaccttttattaagtaataattacattactttttaatgaaaacttacttcatttgatgcttaaccaatgccccgaaggcactgattaacattctcc 19889716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 4141707 - 4141625
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacc 108  Q
    ||||||||||||  | ||||||||||||||||||| |||||||| ||||||  |||||||||||||||||  ||||||||||||    
T  4141707 gtcactttttattcagtaataattacattactttt-aataaaaatttactttatttgatgcttaatcaatgccccgaagacacc 4141625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 18243787 - 18243853
Alignment:
Q  28 actttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||  |||| ||||||| ||||    
T  18243787 actttttattaaataataattatattactttttaataaaaacttactttatttggtgcttaaccaat 18243853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 11610469 - 11610553
Alignment:
Q  39 aataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcct 123  Q
    |||||||||| |||||||||||||| |||||||||||| |||| ||||||| ||||  ||||  | |||  ||||||||||||||    
T  11610469 aataataattgcattactttttaatgaaaacttacttcatttggtgcttaaccaatgccccgggggcactggttaacattctcct 11610553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 21646528 - 21646591
Alignment:
Q  31 ttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    |||||| || ||||||||||||||||||||||| |||||||||||| |||| || |||| ||||    
T  21646528 ttttattaagtaataattacattactttttaatgaaaacttacttcatttggtgtttaaccaat 21646591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 23788456 - 23788520
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaata 95  Q
    ||||||| || |||||||||||||||||||||||||||| ||| || ||||| || ||||||||||    
T  23788456 tttttattaagtaataattacattactttttaataaaaattta-tttttttggtgtttaatcaata 23788520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 29868297 - 29868249
Alignment:
Q  28 actttttatcaaataataattacattacttt-ttaataaaaacttactt 75  Q
    ||||||||||||||||||||||||| ||||| || ||||||||||||||    
T  29868297 actttttatcaaataataattacatcactttctttataaaaacttactt 29868249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 23760642 - 23760687
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttactt 75  Q
    |||||||||| ||||||||||||||||||||||  |||| ||||||    
T  23760642 tttttatcaagtaataattacattactttttaaataaaatttactt 23760687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 43131807 - 43131860
Alignment:
Q  28 actttttatcaaataataattacattactttttaataaaaacttacttcttttg 81  Q
    |||||| ||||| ||||||||||| ||| |||| |||||||||||||| |||||    
T  43131807 acttttgatcaagtaataattacactacctttttataaaaacttacttgttttg 43131860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 36087406 - 36087362
Alignment:
Q  53 tactttttaataaaaacttacttcttttg-atgcttaatcaatat 96  Q
    |||||||| |||||||||||||| ||||| |||||||||||||||    
T  36087406 tactttttcataaaaacttacttgttttgaatgcttaatcaatat 36087362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 7609590 - 7609654
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  7609590 tttttatcaagtaataattacattactttttaataaaaacttacttcttttggtgcttaaccaat 7609654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 2611194 - 2611263
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  2611194 gtcactttttattaagtaataattacattactttttaataaaaacttacttcatttggtgcttaaccaat 2611263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 14863404 - 14863335
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||    
T  14863404 gtcactttttatcaagtaataattacattaatttttaataaaaacttactttttttggtgcttaaccaat 14863335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 21052673 - 21052742
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| ||||||| ||||    
T  21052673 gtcactttttatcaagtaataattacatgattttttaataaaaacttacttcttttggtgcttaaccaat 21052742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 11320193 - 11320096
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcct 123  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | |||| ||||| ||||||| |||| || | | |||||  ||||||||||||||    
T  11320193 gtcactttttatcaagtaataattacattactttttaataaaaattaactt-ttttggtgcttaaccaatgtctcaatgacactggttaacattctcct 11320096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 31619374 - 31619318
Alignment:
Q  38 aaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||    
T  31619374 aaataataattacattactttttaataaaaatttacttcatttggtgcttaaccaat 31619318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 35185308 - 35185229
Alignment:
Q  41 taataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcc 122  Q
    |||||||||||||||||||||||||||||||| ||  |||| ||||||| ||||| ||||||| || | |||||||||||||    
T  35185308 taataattacattactttttaataaaaacttattttatttggtgcttaaccaata-cccgaag-catcggttaacattctcc 35185229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 12187253 - 12187182
Alignment:
Q  23 cggtcactttttatcaaataataattacattacttttt-aataaaaacttacttcttttgatgcttaatcaat 94  Q
    ||||||||||||| ||| |||||||||||||| ||||| ||||||||||||| |  |||| ||||||||||||    
T  12187253 cggtcacttttta-caagtaataattacattatttttttaataaaaacttaccttatttggtgcttaatcaat 12187182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 22180305 - 22180370
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaata 95  Q
    ||||||| |||||||||||| |||| ||||||||||||| ||| ||  |||| ||||||| |||||    
T  22180305 tttttattaaataataattatattattttttaataaaaatttattttatttggtgcttaaccaata 22180370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 31884510 - 31884574
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  31884510 tttttatcaaataataattacattactttttaataaaaacttactttttttggtgcttaaccaat 31884574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 26855872 - 26855969
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcct 123  Q
    ||||||||||||||| ||||||||||||||| |||||||||||| ||||||  |||| ||||||| ||||  |||| || |||| ||||||||||||||    
T  26855872 gtcactttttatcaagtaataattacattac-ttttaataaaaatttactttatttggtgcttaaccaatgccccggaggcaccggttaacattctcct 26855969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 27742617 - 27742524
Alignment:
Q  29 ctttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcct 123  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||| ||||||| ||||  ||||   ||||| ||||||||||||||    
T  27742617 ctttttattaagtaataattacattactttttaataaaaaattacttcttttgttgcttaaccaat-gcccgggaacaccagttaacattctcct 27742524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 40391263 - 40391332
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| ||||| |||| ||||||| ||||    
T  40391263 gtcactttttatcaagtaataattacattactttttgataaaaactcacttcatttggtgcttaaccaat 40391332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 50127393 - 50127462
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    |||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| | ||||| ||||    
T  50127393 gtcattttttatcgagtaataattacattactttttaataaaaacttacttcttttggtacttaaccaat 50127462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 18910454 - 18910533
Alignment:
Q  28 actttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacc 108  Q
    ||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||| || ||||||||| |||||| ||||||    
T  18910454 actttttat-aaataatgattacattactttttaataaaaatttatttcttttggtgtttaatcaatgtcccgaggacacc 18910533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 44109120 - 44109184
Alignment:
Q  29 ctttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    |||||||| || |||||||||||||||||||||||||||||||||||| |||| || |||||||||    
T  44109120 ctttttattaagtaataattacattactttttaataaaaacttacttcatttg-tggttaatcaat 44109184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 13534547 - 13534592
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttactt 75  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||    
T  13534547 tttttaccaaataataattacattactttttaataaaaatttactt 13534592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 50468847 - 50468923
Alignment:
Q  20 aaccggtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatat 96  Q
    |||| |||| ||||||| || |||||||||||||||||||||||||||| ||||||   ||||| ||||| ||||||    
T  50468847 aacctgtcattttttattaagtaataattacattactttttaataaaaatttactttacttgatacttaaccaatat 50468923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 30627655 - 30627730
Alignment:
Q  20 aaccggtcactttttatcaaataataattacattactttttaa-taaaaacttacttcttttgatgcttaatcaat 94  Q
    |||| |||||||||||| || |||| ||||||||||||||||| |||||| |||||||| ||| ||||||| ||||    
T  30627655 aacctgtcactttttataaagtaatgattacattactttttaattaaaaatttacttctcttggtgcttaaccaat 30627730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 16963639 - 16963689
Alignment:
Q  44 taattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||||| ||||    
T  16963639 taattacattactttttaataaaaatttacttcatttggtgcttaaccaat 16963689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 19066928 - 19066878
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttactt 75  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||| ||||||    
T  19066928 gtcactttttaccaagtaataattacaatactttttaataaaaatttactt 19066878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 19114818 - 19114768
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttactt 75  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||| ||||||    
T  19114818 gtcactttttaccaagtaataattacaatactttttaataaaaatttactt 19114768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 33827871 - 33827913
Alignment:
Q  26 tcactttttatcaaataataattacattactttttaataaaaa 68  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  33827871 tcactttttattaagtaataattacattactttttaataaaaa 33827913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 33840094 - 33840052
Alignment:
Q  26 tcactttttatcaaataataattacattactttttaataaaaa 68  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  33840094 tcactttttattaagtaataattacattactttttaataaaaa 33840052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 48282936 - 48282981
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaact 70  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||    
T  48282936 gtcactttttatcaggtaataattacattactttttagtaaaaact 48282981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 20471377 - 20471413
Alignment:
Q  25 gtcactttttatcaaataataattacattacttttta 61  Q
    |||||||||||||||| ||||||||||||||||||||    
T  20471377 gtcactttttatcaaaaaataattacattacttttta 20471413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 20560160 - 20560124
Alignment:
Q  25 gtcactttttatcaaataataattacattacttttta 61  Q
    |||||||||||||||| ||||||||||||||||||||    
T  20560160 gtcactttttatcaaaaaataattacattacttttta 20560124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 15419699 - 15419746
Alignment:
Q  28 actttttatcaaataataattacattactttttaataaaaacttactt 75  Q
    ||||||||| || ||||||||| |||||||||||||||||| ||||||    
T  15419699 actttttattaagtaataattatattactttttaataaaaatttactt 15419746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 33148957 - 33148912
Alignment:
Q  35 atcaaataataattacattactttttaataaaaacttacttctttt 80  Q
    ||||| ||||||||||| ||||||||| ||||||||||||| ||||    
T  33148957 atcaagtaataattacactactttttattaaaaacttacttatttt 33148912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 15671162 - 15671231
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||||| ||||    
T  15671162 gtcactttttatcaagtaataattacattactttttaataaaaacttacttcatttggttcttaaccaat 15671231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 44291275 - 44291344
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    |||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||| ||||    
T  44291275 gtcactttttattaagtaataattacattactttttaataaatacttacttcttttggtgcttaaccaat 44291344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 35322076 - 35322016
Alignment:
Q  26 tcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgct 86  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||    
T  35322076 tcactttttattaagtaataattacattactttttaataaaaacttacttcttttggtgct 35322016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 42163652 - 42163746
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattc 119  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||| |||| ||  ||| ||||  |||| || |||| ||||||||||    
T  42163652 gtcactttttattaagtaataattacattactttttaataaaaacttacttcatttggtgtgtaaccaatgccccggaggcaccggttaacattc 42163746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 43652514 - 43652612
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcct 123  Q
    |||| ||||||||| |||||||||||||||||||||| || ||||||||||| |||| |||||||   || |||||||| |||  ||||||||||||||    
T  43652514 gtcattttttatcagataataattacattactttttagtagaaacttacttcatttggtgcttaacggatgtcccgaaggcactggttaacattctcct 43652612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 43863009 - 43862911
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcct 123  Q
    |||||| ||||| || |||||||||||||||||||||||||||||||||||| ||||  |||||| ||||  |||   | |||| ||||||||||||||    
T  43863009 gtcactctttattaagtaataattacattactttttaataaaaacttacttcatttggggcttaaccaatgccccaggggcaccggttaacattctcct 43862911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 2379659 - 2379721
Alignment:
Q  35 atcaaataataattacattactttttaataaaaacttacttcttttga-tgcttaatcaatat 96  Q
    ||||| ||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  2379659 atcaagtaagaattacactactttttaataaaaacttacttattttgattgcttaatcaatat 2379721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 27144064 - 27143998
Alignment:
Q  28 actttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    ||||||||| || |||||||||||||| ||||||||||||||||| ||| |||| ||||||| ||||    
T  27144064 actttttattaagtaataattacattattttttaataaaaacttagttcatttgttgcttaaccaat 27143998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 43014699 - 43014635
Alignment:
Q  39 aataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaag 103  Q
    |||| ||||||||||||||||||| ||||||||||||  |||| ||||||||||||  |||||||    
T  43014699 aatagtaattacattactttttaacaaaaacttactttatttggtgcttaatcaatgccccgaag 43014635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 17560771 - 17560721
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttacttctttt 80  Q
    |||| |||||||||||||||||||| ||||||||||||| ||| |||||||    
T  17560771 ttttgatcaaataataattacattaatttttaataaaaatttatttctttt 17560721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 44041370 - 44041415
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaact 70  Q
    |||||||||||| || |||||||||||||||||||||||| |||||    
T  44041370 gtcactttttattaagtaataattacattactttttaatataaact 44041415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 49711000 - 49710944
Alignment:
Q  38 aaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    |||||||||||| |||| ||||||||||||||||| ||  |||| ||||||||||||    
T  49711000 aaataataattatattaatttttaataaaaacttattttatttggtgcttaatcaat 49710944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 32720566 - 32720616
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttactt 75  Q
    |||||| ||||| || ||||||||| |||| ||||||||||||||||||||    
T  32720566 gtcactatttattaagtaataattatattattttttaataaaaacttactt 32720616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 49419097 - 49419139
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaa 67  Q
    |||||||||||| || |||||||||||| ||||||||||||||    
T  49419097 gtcactttttattaactaataattacataactttttaataaaa 49419139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 17109586 - 17109630
Alignment:
Q  31 ttttatcaaataataattacattactttttaataaaaacttactt 75  Q
    |||||| || |||||||||||| ||||||||||||||| ||||||    
T  17109586 ttttattaagtaataattacataactttttaataaaaatttactt 17109630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 29795573 - 29795509
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaa 89  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||    
T  29795573 gtcactttttatcaattaataattacattactttttaacaaaaacttaattcttttggtgcttaa 29795509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 30924900 - 30924836
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaa 89  Q
    ||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||| |||||||    
T  30924900 gtcacttttcatcaagtaataattacattactttctaacaaaaacttacttcttttggtgcttaa 30924836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 20821958 - 20821908
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttactt 75  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||    
T  20821958 gtcactttttattaagtaataattacattactttttaataaaaacttactt 20821908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 39065579 - 39065648
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||| |||||||||||  ||||||| ||||    
T  39065579 gtcactttttatcaagtaataatgacattattttttaataaaaatttacttcttttagtgcttaaccaat 39065648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 41675721 - 41675785
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    |||||||||| ||||||||| ||| |||||||||||||| |||||||||||| ||||||| ||||    
T  41675721 tttttatcaagtaataattatatttctttttaataaaaatttacttcttttggtgcttaaccaat 41675785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 28462590 - 28462663
Alignment:
Q  26 tcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccg 100  Q
    ||||||||||| || ||||||||||||||| |||||||||||||||||||| |||| || |||| |||| |||||    
T  28462590 tcactttttattaagtaataattacattac-ttttaataaaaacttacttcatttggtgtttaaccaatgtcccg 28462663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 39534190 - 39534247
Alignment:
Q  32 tttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaa 89  Q
    |||||||| |||||||||||||||||||||||||||| |||| || |||| |||||||    
T  39534190 tttatcaagtaataattacattactttttaataaaaatttacctcatttggtgcttaa 39534247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 900279 - 900329
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttactt 75  Q
    |||| ||||||| || ||||||||| |||||||||||||||||||||||||    
T  900279 gtcattttttattaagtaataattatattactttttaataaaaacttactt 900329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 37919467 - 37919417
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttactt 75  Q
    |||| ||||||| || |||||||||||||||||||||||||||| ||||||    
T  37919467 gtcattttttattaagtaataattacattactttttaataaaaatttactt 37919417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 38362265 - 38362318
Alignment:
Q  41 taataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    ||||||||||||| |||||||||||||| ||||||  |||||||||||| ||||    
T  38362265 taataattacattgctttttaataaaaatttactttatttgatgcttaaccaat 38362318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 39209414 - 39209476
Alignment:
Q  31 ttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    |||||| |||||||||| |||| ||||||||||||||| ||||||| |||| ||||||| ||||    
T  39209414 ttttattaaataataat-acatcactttttaataaaaatttacttcgtttggtgcttaaccaat 39209476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 43917652 - 43917581
Alignment:
Q  28 actttttatcaaataataattacattactttttaataaaaacttacttctttt-gatgcttaatcaatatcc 98  Q
    |||||| |||||||||||||||||  | ||||| ||||||| |||||| |||| ||||||||| ||||||||    
T  43917652 acttttaatcaaataataattacacaatttttttataaaaatttacttgttttggatgcttaaccaatatcc 43917581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 14110659 - 14110708
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttactt 75  Q
    |||||||||||| || |||||||||||| ||||||||||||||| ||||||    
T  14110659 gtcactttttat-aagtaataattacataactttttaataaaaatttactt 14110708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 9791910 - 9791962
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttacttcttttga 82  Q
    |||| ||||| |||| |||| || |||||||||||||| ||||||||||||||    
T  9791910 ttttgatcaactaattattatatcactttttaataaaatcttacttcttttga 9791962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 52080 - 51983
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatcccgaagacacccgttaacattctcc 122  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||  |||   | |||| |||||| ||| | ||||| |||||||||||||    
T  52080 gtcattttttaccaaataataattacattactttttaataaaaacttactttatttagcgtttaaccaatattccggaaacaccggttaacattctcc 51983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 4803218 - 4803159
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaa 89  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||||||||| |||||||    
T  4803218 tttttatcaagtaataattacattactttttagtaaaaatttacttcttttggtgcttaa 4803159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 17506334 - 17506234
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaata--aaaacttacttcttttgatgcttaatcaatatcccga-agacacccgttaacattctc 121  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||| ||| ||| ||||  ||||| || |||| ||||||||||||    
T  17506334 gtcactttttatcaagtaataattacattactttttaataaaaaaaattacttcttttggtgcctaaccaat-gcccgagaggcaccggttaacattctc 17506236  T
Q  122 ct 123  Q
    ||    
T  17506235 ct 17506234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 21809851 - 21809898
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaactta 72  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  21809851 gtcactttttatcaagtaataattacgttactttttaataaaaactta 21809898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 10008263 - 10008205
Alignment:
Q  23 cggtcactttttatcaaataataattacattactttttaataaaaacttacttcttttg 81  Q
    |||| |||||| ||||| |||||||||||  ||||||||||||||||||||||||||||    
T  10008263 cggttacttttgatcaagtaataattacaccactttttaataaaaacttacttcttttg 10008205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 19418647 - 19418569
Alignment:
Q  41 taataattacattactttttaataaaaacttacttctttt-gatgcttaatcaatatcccgaagacacccgttaacatt 118  Q
    |||| ||||||| |||||||||||||| |||||||||||| ||||||||| ||||| |||||| ||||  |||||||||    
T  19418647 taattattacatcactttttaataaaatcttacttcttttggatgcttaaccaataccccgaaaacactagttaacatt 19418569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 10253018 - 10252938
Alignment:
Q  41 taataattacattactttttaataaaaacttacttctttt-gatgcttaatcaatatcccgaagacacccgttaacattct 120  Q
    |||| ||||||| | |||||||||||| |||||||||||| | ||||||| ||||| | || ||||||| |||||||||||    
T  10253018 taattattacatcattttttaataaaatcttacttcttttggttgcttaaccaatacctcggagacaccggttaacattct 10252938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 7592777 - 7592697
Alignment:
Q  42 aataattacattactttttaataaaaacttacttcttttgatgc-ttaatcaatatcccgaagacacccgttaacattctc 121  Q
    ||||||||||| ||||||||||  |||||||||| |||| || | ||||||||| || | ||||||| | |||||||||||    
T  7592777 aataattacatcactttttaatttaaacttacttattttaatactttaatcaatgtctcaaagacactctttaacattctc 7592697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 16875 - 16945
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaata 95  Q
    ||||||||||||||| ||||||||| || | ||||||||||||||||| |||||||| ||||||| |||||    
T  16875 gtcactttttatcaagtaataattatataattttttaataaaaacttatttcttttggtgcttaaccaata 16945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 1330 - 1379
Alignment:
Q  28 actttttatcaaataataattacattactttttaataaaaacttacttct 77  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  1330 actttttatcaagtaataattacatttctttttaataaaaacttacttct 1379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 38869 - 38800
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaat 94  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||| ||  |||||| ||||| ||||    
T  38869 gtcattttttatcaagtaataattacattactttttaataaaaacttattttatttgattcttaaccaat 38800  T

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Target: scaffold0886 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 1150 - 1222
Alignment:
Q  25 gtcactttttatcaaataataattacattactttttaataaaaacttacttcttttgatgcttaatcaatatc 97  Q
    |||||||||||| || ||||||||||||||||||||||||||| |||| ||  |||||| ||||| |||||||    
T  1150 gtcactttttattaagtaataattacattactttttaataaaagcttattttatttgattcttaaccaatatc 1222  T

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Target: scaffold0078 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 912 - 957
Alignment:
Q  30 tttttatcaaataataattacattactttttaataaaaacttactt 75  Q
    ||||||| |||||||||||||||||| || ||||||||| ||||||    
T  912 tttttattaaataataattacattacattctaataaaaatttactt 957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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