View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15401_low_18 (Length: 493)
Name: NF15401_low_18
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 10 - 476
Target Start/End: Complemental strand, 46017336 - 46016870
Alignment:
| Q |
10 |
attattctcatatcaatcatatatgtcatatgcatatatggaaaataatggttattttcatatgcagaaatgatattgaaacgaatatcaatgtctttag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46017336 |
attattctcatatcaatcatatatgtcatatgcatatatggaaaataatggttattttcatatgcagaaatgatattgaaacgaatatcaatgtctttag |
46017237 |
T |
|
| Q |
110 |
aagatttttgtcatgaagctaaaattgtaggtaactaaattttcatggttagctagttagcatcattgtatgattggaatggagtctaccaagaagaaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46017236 |
aagatttttgtcatgaagctaaaattgtaggtaactaaattttcatggtttgctagttagcatcattgtatgattggaatggagtctaccaagaagaaga |
46017137 |
T |
|
| Q |
210 |
aaaagaaaacgacaaccgtactcaaaatggctatgcaacactgtcaagtactactaagtagtggtgggacaaaccttttatatcatcaaatnnnnnnntt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
46017136 |
aaaagaaaacgacaaccgtactcaaaatggctatgcaacactgtcaagtactactaagtagtggtgggacaaacctttcatatcatcaaatcaaaaaatt |
46017037 |
T |
|
| Q |
310 |
tgcattgcatttcgttctcataaaaaataaatcactgctttcttgcaattaaaattgtcaggtaccaagtactgtattaaatctaagtgactcaagtatc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46017036 |
tgcattgcatttcgttctcataaaaaataaatcactgctttcttgcaattaaaattgtcaggtaccaagtactgtattaaatctaagtgactcaagtatc |
46016937 |
T |
|
| Q |
410 |
agactgcacctgtaaccataatacccttactttataatagcagagatttagaaagagtagttatttg |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46016936 |
agactgcacctgtaaccataatacccttactttataatagcagagatttagaaagagtagttatttg |
46016870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University