View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_2 (Length: 850)
Name: NF15401_low_2
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-179; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 391 - 832
Target Start/End: Complemental strand, 8774270 - 8773831
Alignment:
| Q |
391 |
ctcgtgattttccagggattaaaaacatatttaaccctgtaagctcaaataagtcaatagacccaaatcagggcgtgcatgcattccccttatgtnnnnn |
490 |
Q |
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| T |
8774270 |
ctcgtgattttccggggattaaaaacatatttaaccctataagctcaaataagtcaataaacccaaatcagggtgtgcatgcattccccttatgtaaaaa |
8774171 |
T |
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| Q |
491 |
nnnntattaagcaagctatgcaagagagtttgtaagctcaaataagctatctcacacatcatcagaagtacttattcccgtttataagctcaaataagtc |
590 |
Q |
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| T |
8774170 |
aa--tattaagcaagctatgcaagagagtttgtaagctcaaataagctatctcacacatcatcagaagtacttattccagtttataagctcaaataagtc |
8774073 |
T |
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| Q |
591 |
aaaaggctcaaatcagggtttgcatgcatggcccttaggtaacnnnnnnngtgattgacaaagacaacctattttgttaattattttcaatgnnnnnnnt |
690 |
Q |
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| T |
8774072 |
aaaaggctcaaatcagggtttgcatgcatggcccttaggtaacaaaaaaagtgattgacaaagacaacctattttgttaattaatttcaatgaaaaaaat |
8773973 |
T |
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| Q |
691 |
gcaaacatagtttgatcgaaataacnnnnnnntacagagaaaatcaataaaggatgttacaaatacaatagaagacaagattgttgtttcatgatgatca |
790 |
Q |
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| T |
8773972 |
gcaaacatagtttgatcgaaataacaaaaaaatacagagaaaatcaataaagggtgttacaaatacaatagaagacaagattgttgtttcatgatgatca |
8773873 |
T |
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| Q |
791 |
atgtaacaagaaacaatagagaaacaaaaagaaagagtaacg |
832 |
Q |
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| T |
8773872 |
atgtaacaagaaacaatagagaaacaaaaagaaagagtaacg |
8773831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 8774696 - 8774637
Alignment:
| Q |
282 |
tccattttttgtaatgactattttgaaaaag---gattattcttacaaactgcaatatca |
338 |
Q |
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| T |
8774696 |
tccattttttgtgatgactattttgaaaaagaaggattattcttacaaactgcaatatca |
8774637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 8774807 - 8774763
Alignment:
| Q |
193 |
gtttttagtccctacaaaaccacgagatttcatgtttagtccctg |
237 |
Q |
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| T |
8774807 |
gtttttagtccctacaaaatcacgagatttcatgtttagtccctg |
8774763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 33991719 - 33991769
Alignment:
| Q |
80 |
ctcaattgcaattaaatttcataccttaatcatgttcataccttaattatg |
130 |
Q |
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| T |
33991719 |
ctcaattgcaattaaatttcatgccttaatcatgttcataccttaattatg |
33991769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 394 - 428
Target Start/End: Original strand, 31050115 - 31050149
Alignment:
| Q |
394 |
gtgattttccagggattaaaaacatatttaaccct |
428 |
Q |
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| T |
31050115 |
gtgattttgcagggattaaaaacatatttaaccct |
31050149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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