View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15401_low_20 (Length: 462)

Name: NF15401_low_20
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15401_low_20
NF15401_low_20
[»] chr1 (14 HSPs)
chr1 (16-451)||(47319639-47320087)
chr1 (34-279)||(47316359-47316605)
chr1 (337-451)||(47316129-47316243)
chr1 (337-442)||(47314399-47314504)
chr1 (189-288)||(47314599-47314700)
chr1 (135-255)||(47319635-47319755)
chr1 (57-260)||(47316120-47316323)
chr1 (135-204)||(47314437-47314506)
chr1 (73-140)||(47314698-47314765)
chr1 (56-176)||(47307046-47307166)
chr1 (299-342)||(47316251-47316294)
chr1 (348-451)||(47316387-47316490)
chr1 (299-344)||(47307091-47307136)
chr1 (299-344)||(47311166-47311211)


Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Complemental strand, 47320087 - 47319639
Alignment:
Q  16 gcttcatcaacttgaagttcatatttcaactctaatccatcatcaccttgttgttcatcaccatccaatggaagtgagattttgtgtccctctggcaacc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47320087 gcttcatcaacttgaagttcatatttcaactctaatccatcatcaccttgttgttcatcaccatccaatggaagtgagattttgtgtccctctggcaacc 47319988  T
Q  116 aagtgttgattcccaaaagtaaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaac 215  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47319987 aagtgttgagtcccaaaagtaaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaac 47319888  T
Q  216 tacgagtttcaagaattcatcatacttttccatcttatctggaaatgcaactttaactgctgttgcaaacgacgttgggaatagaagtgggatttcatct 315  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47319887 tacgagtttcaagaattcatcatacttttccatcttatatggaaatgcaactttaactgctgttgcaaacgacgttgggaatagaagtgggatttcatct 47319788  T
Q  316 cctggtggcaagaagatgttgaatc-------------ttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttgg 402  Q
    |||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47319787 cctggtggcaagaagatgttgaatcttgaaattaaatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttgg 47319688  T
Q  403 ccctgaaatcatgtaggagtttcatgaaatcatcaaacttttccttctt 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47319687 ccctgaaatcatgtaggagtttcatgaaatcatcaaacttttccttctt 47319639  T

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Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 34 - 279
Target Start/End: Complemental strand, 47316605 - 47316359
Alignment:
Q  34 tcatatttcaactctaatccatcatcaccttgttgttc-atcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgattcccaaa 132  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||  | ||||||| |||  ||    
T  47316605 tcatctttcaactctaatccatcatcaccttgttgttctatcaccatccaatgaaagtgagattttgtgtccctctggcaagaaggtgttgaatcctgaa 47316506  T
Q  133 agtaaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaagaatt 232  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||||| | ||||||| ||| ||||||||||||||    
T  47316505 agtaaatttttatggtctttaaacaactccatcattccttctttgacaactcttacatcaattcttttggcttggtaatcagctaggagtttcaagaatt 47316406  T
Q  233 catcatacttttccatcttatctggaaatgcaactttaactgctgtt 279  Q
    |||   |||||||||||||||||  ||||| ||| |||||| |||||    
T  47316405 cattgaacttttccatcttatcttcaaatgtaaccttaacttctgtt 47316359  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 337 - 451
Target Start/End: Complemental strand, 47316243 - 47316129
Alignment:
Q  337 aatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatc 436  Q
    |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| | |||||| ||||||||||||| ||| || ||    
T  47316243 aatcttgatgttctttcaacaactccgtaactccttctttgacgactcttctatcaattcttttggcgccgaaatcttgtaggagtttcacgaattcttc 47316144  T
Q  437 aaacttttccttctt 451  Q
    | || ||||| ||||    
T  47316143 atacatttccctctt 47316129  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 337 - 442
Target Start/End: Complemental strand, 47314504 - 47314399
Alignment:
Q  337 aatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatc 436  Q
    |||||||||| ||||| ||||||||||||| |||||||||||  |||||| |||||||||||||||| |  ||||||||||||||||||||||| || ||    
T  47314504 aatcttgatgctctttaaacaactccataactccttctttgacaactcttttatcaattcttttggcaccaaaatcatgtaggagtttcatgaactcgtc 47314405  T
Q  437 aaactt 442  Q
    ||||||    
T  47314404 aaactt 47314399  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 288
Target Start/End: Complemental strand, 47314700 - 47314599
Alignment:
Q  189 atcaattcttttggcattgtaatcaactacgagtttcaagaatt--catcatacttttccatcttatctggaaatgcaactttaactgctgttgcaaacg 286  Q
    ||||||||||||||||| ||||| ||||| |||||||| |||||  || ||||||||||| |||||| | |||||||||||||||| |||||| ||| ||    
T  47314700 atcaattcttttggcatggtaattaactaggagtttcaggaattttcaccatacttttccctcttattttgaaatgcaactttaaccgctgttacaagcg 47314601  T
Q  287 ac 288  Q
    ||    
T  47314600 ac 47314599  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 47319755 - 47319635
Alignment:
Q  135 taaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaagaattca 234  Q
    |||||||| ||| ||||| ||||||||||| | |||||||||||  |||||  ||||||||||||||||  || |||||  || |||||||| ||| |||    
T  47319755 taaatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatca 47319656  T
Q  235 tcatacttttccatcttatct 255  Q
    ||| |||||||| ||||||||    
T  47319655 tcaaacttttccttcttatct 47319635  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 57 - 260
Target Start/End: Complemental strand, 47316323 - 47316120
Alignment:
Q  57 atcaccttgttgttcatcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgattcccaaaagtaaatctttatggtctttaaac 156  Q
    ||||| |||||||  |||| |||||||||||||||||||||  |||||   ||||||  |  |||||| ||  |||| |||||||| ||| ||||| |||    
T  47316323 atcacgttgttgtaaatcatcatccaatggaagtgagatttcatgtcctggtggcaagaagatgttgaatcttaaaattaaatcttgatgttctttcaac 47316224  T
Q  157 aactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaagaattcatcatacttttccatcttatctg 256  Q
    |||||| | | |||||||||||  |||||  ||||||||||||||||   | ||||   || |||||||| |||||| |||||| ||||| ||||||||     
T  47316223 aactccgtaactccttctttgacgactcttctatcaattcttttggcgccgaaatcttgtaggagtttcacgaattcttcatacatttccctcttatctt 47316124  T
Q  257 gaaa 260  Q
    ||||    
T  47316123 gaaa 47316120  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 47314506 - 47314437
Alignment:
Q  135 taaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggca 204  Q
    |||||||| ||| ||||||||||||||||| | ||||||||||| ||||||  |||||||||||||||||    
T  47314506 taaatcttgatgctctttaaacaactccataactccttctttgacaactcttttatcaattcttttggca 47314437  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 47314765 - 47314698
Alignment:
Q  73 tcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgattcccaaaagtaaatc 140  Q
    |||||| ||||||||| ||||||||||||||||  ||||||  ||||||||| |||||||||||||||    
T  47314765 tcaccacccaatggaaatgagattttgtgtcccggtggcaagaaagtgttgagtcccaaaagtaaatc 47314698  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 47307166 - 47307046
Alignment:
Q  56 catcaccttgttgttcatcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgattcccaaaagtaaatctttatggtctttaaa 155  Q
    |||||||| ||||||||||| |||||||||||||||||||||  |||||   ||||||  |  |||||| ||   ||| |||| ||||||| ||||| ||    
T  47307166 catcacctcgttgttcatcatcatccaatggaagtgagatttcttgtcctggtggcaagaagatgttgaatcttgaaattaaacctttatgatcttttaa 47307067  T
Q  156 caactccatcagtccttcttt 176  Q
    ||||||| ||| |||||||||    
T  47307066 caactccgtcattccttcttt 47307046  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 47316294 - 47316251
Alignment:
Q  299 gaagtgggatttcatctcctggtggcaagaagatgttgaatctt 342  Q
    |||||| |||||||| ||||||||||||||||||||||||||||    
T  47316294 gaagtgagatttcatgtcctggtggcaagaagatgttgaatctt 47316251  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 451
Target Start/End: Complemental strand, 47316490 - 47316387
Alignment:
Q  348 tctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatcaaacttttcct 447  Q
    ||||| ||||||||||| |||||||||||||  ||||||  |||||||||||||||   | |||||  ||||||||||| ||| ||||  |||||||||     
T  47316490 tctttaaacaactccatcattccttctttgacaactcttacatcaattcttttggcttggtaatcagctaggagtttcaagaattcattgaacttttcca 47316391  T
Q  448 tctt 451  Q
    ||||    
T  47316390 tctt 47316387  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 47307136 - 47307091
Alignment:
Q  299 gaagtgggatttcatctcctggtggcaagaagatgttgaatcttga 344  Q
    |||||| |||||| | ||||||||||||||||||||||||||||||    
T  47307136 gaagtgagatttcttgtcctggtggcaagaagatgttgaatcttga 47307091  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 47311211 - 47311166
Alignment:
Q  299 gaagtgggatttcatctcctggtggcaagaagatgttgaatcttga 344  Q
    |||||| |||||||| ||||| ||||| ||||||||||||||||||    
T  47311211 gaagtgagatttcatgtcctgatggcatgaagatgttgaatcttga 47311166  T

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