View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15401_low_21 (Length: 457)
Name: NF15401_low_21
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 22 - 450
Target Start/End: Original strand, 16232279 - 16232710
Alignment:
| Q |
22 |
gagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataataatcagatgctgaaaatgt |
121 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16232279 |
gagtatttcggtgtagtggcattcatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataataatcagatgctgaaaatgt |
16232378 |
T |
|
| Q |
122 |
caataccttgttgcag---cagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttgc |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16232379 |
caataccttgttgcagcagcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttgc |
16232478 |
T |
|
| Q |
219 |
aaactgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggca |
318 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16232479 |
aaaccgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccgatgatcatgttcttaattaatgaaatccctgtgtccgggggca |
16232578 |
T |
|
| Q |
319 |
tcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcaccc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16232579 |
tcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcaccc |
16232678 |
T |
|
| Q |
419 |
aagcatacttgaatgaacgcatcttcatctca |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
16232679 |
aagcatacttgaatgaacgcatcttcatctca |
16232710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 450
Target Start/End: Original strand, 34690938 - 34691361
Alignment:
| Q |
22 |
gagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataataatcagatgctgaaaa-tg |
120 |
Q |
| |
|
|||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| | |
|
|
| T |
34690938 |
gagtatttgggtgtaatggcatccatctgcgaagatagatgttaataattaatacttatataaatgaattataaaaataat---caaatgctgaaaaata |
34691034 |
T |
|
| Q |
121 |
tcaataccttgttgcagcag---atcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttg |
217 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
34691035 |
taaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcg |
34691134 |
T |
|
| Q |
218 |
caaactgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggc |
317 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
34691135 |
caaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgatcatgttcttaat----gaaatccctgtgtccgggagc |
34691230 |
T |
|
| Q |
318 |
atcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacc |
417 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34691231 |
atcaatgagagtgaagcagtacttggttgtctcaaacttgcata--gaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacc |
34691328 |
T |
|
| Q |
418 |
caagcatacttgaatgaacgcatcttcatctca |
450 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
34691329 |
caagcatacttgaatgaacgcttcttcatctca |
34691361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 450
Target Start/End: Original strand, 34713350 - 34713773
Alignment:
| Q |
22 |
gagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataataatcagatgctgaaaa-tg |
120 |
Q |
| |
|
|||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| | |
|
|
| T |
34713350 |
gagtatttgggtgtaatggcatccatctgcgaagatagatgttaataattaatacttatataaatgaattataaaaataat---caaatgctgaaaaata |
34713446 |
T |
|
| Q |
121 |
tcaataccttgttgcagcag---atcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttg |
217 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
34713447 |
taaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcg |
34713546 |
T |
|
| Q |
218 |
caaactgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggc |
317 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
34713547 |
caaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgatcatgttcttaat----gaaatccctgtgtccgggagc |
34713642 |
T |
|
| Q |
318 |
atcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacc |
417 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34713643 |
atcaatgagagtgaagcagtacttggttgtctcaaacttgcata--gaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacc |
34713740 |
T |
|
| Q |
418 |
caagcatacttgaatgaacgcatcttcatctca |
450 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
34713741 |
caagcatacttgaatgaacgcttcttcatctca |
34713773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 299 - 436
Target Start/End: Original strand, 33861221 - 33861361
Alignment:
| Q |
299 |
aatccctgtgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagc |
398 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| | | ||||| | |||||||||| || | ||| |||| |||||| | ||||||||||||||||||||| |
|
|
| T |
33861221 |
aatccctgtgtccaggggcatcaatgacagtgtaccggtactggtttgtctcaaaattacgcatagaaacgtcaatggagatacctctttcacgctcagc |
33861320 |
T |
|
| Q |
399 |
cttgagcttgtcaagcaccca---agcatacttgaatgaac |
436 |
Q |
| |
|
|| |||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
33861321 |
ctcgagcttgtcaagaacccaattagcatacttgaatgaac |
33861361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 33861059 - 33861131
Alignment:
| Q |
133 |
tgcagcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttaga |
205 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | || || || |||||||| | ||||||||||| |||||| |
|
|
| T |
33861059 |
tgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccatgcttaga |
33861131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 20 - 448
Target Start/End: Complemental strand, 45983892 - 45983463
Alignment:
| Q |
20 |
tagagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataat-------aatc----ag |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||| |||| || |
|
|
| T |
45983892 |
tagagtatttaggtgtagtggcatccatctgtcggggtagatg---ataattagtacttatataaatgaattataaaaataatcaaatacaatcttaaag |
45983796 |
T |
|
| Q |
109 |
atgctgaaaatgtcaataccttgttgcagcag---atcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttaga |
205 |
Q |
| |
|
|| |||||| | |||||||||||||||||| |||||||| |||||||||||||| | ||||| ||||||||||| | ||||||||||| | || |
|
|
| T |
45983795 |
gggcggaaaatataaataccttgttgcagcagcagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgggtctgaccattcata-- |
45983698 |
T |
|
| Q |
206 |
ccaaccagcttgcaaactgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccct |
305 |
Q |
| |
|
|| |||| |||| ||||||||||| ||||| ||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
45983697 |
----ccggcttcaaaaccaccagtagtggaatcaatgacgagaacagcacagtcagcttgggacgttccggtgatcatgttcttaat----gaaatccct |
45983606 |
T |
|
| Q |
306 |
gtgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagc |
405 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||| ||||||||||||| ||| || |||||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
45983605 |
gtgtccgggggcatcaatgacagtgcagttgtacttgtttgtctcaaacttcgacagggtaatgtcaattgtaacacctctttcacgttcagccttgagc |
45983506 |
T |
|
| Q |
406 |
ttgtcaagcacccaagcatacttgaatgaacgcatcttcatct |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
45983505 |
ttgtcaagcacccaagcatacttgaatgaacgcttgttcatct |
45983463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 123 - 438
Target Start/End: Complemental strand, 45993567 - 45993253
Alignment:
| Q |
123 |
aataccttgttgcagca---gatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttgca |
219 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||| | ||||| ||||||||||| | |||||||||||||| || ||| |||| | |
|
|
| T |
45993567 |
aataccttgttgcagcaacagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgagtctgaccatcctttgaaataccggcttcaa |
45993468 |
T |
|
| Q |
220 |
aactgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcat |
319 |
Q |
| |
|
||| |||||||||||| |||| ||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
45993467 |
aaccacgagtagtggaatcaatgatgagaacagcacaatcagcttgggacgtcccggtgatcatgttcttaat----gaaatccctgtgtccggaggcat |
45993372 |
T |
|
| Q |
320 |
caatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcaccca |
419 |
Q |
| |
|
|||||| ||||| | ||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45993371 |
caatgacagtgcagctgtacttgtttgtctcaaacttcgacaaagaactgtcaattgtgatacctctttcacgctcagtcttgagcttgtcaagcaccca |
45993272 |
T |
|
| Q |
420 |
agcatacttgaatgaacgc |
438 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
45993271 |
agcatacttgaatgaacgc |
45993253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 113 - 431
Target Start/End: Complemental strand, 38137945 - 38137628
Alignment:
| Q |
113 |
tgaaaatgtcaataccttgttgcagcag---atcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaa |
209 |
Q |
| |
|
||||||| | |||||||||||||||||| |||||||| | |||||||||| | | ||||| ||||||||||| |||||||||| |||| ||| || |
|
|
| T |
38137945 |
tgaaaatataaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataa |
38137846 |
T |
|
| Q |
210 |
ccagcttgcaaactgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgt |
309 |
Q |
| |
|
||||||| ||||| ||| ||||||| ||||| ||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
38137845 |
ccagcttcaaaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtaatcatgttcttaat----gaaatccctgtgt |
38137750 |
T |
|
| Q |
310 |
ccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgt |
409 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
38137749 |
ccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcacgctcggccttgagcttgt |
38137650 |
T |
|
| Q |
410 |
caagcacccaagcatacttgaa |
431 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
38137649 |
cgagcacccaagcatacttgaa |
38137628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 123 - 450
Target Start/End: Original strand, 43045204 - 43045530
Alignment:
| Q |
123 |
aataccttgttgca---gcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttgca |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| | ||||| ||||||||||| | |||||||||||||||||| ||| |||| | |
|
|
| T |
43045204 |
aataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaa |
43045303 |
T |
|
| Q |
220 |
aactgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcat |
319 |
Q |
| |
|
||| ||||||||||| |||| ||||| ||||| ||||||| ||| || ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43045304 |
aaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaa----tgaaatccctgtgtccgggggcat |
43045399 |
T |
|
| Q |
320 |
caatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcaccca |
419 |
Q |
| |
|
| |||| ||||| |||||||||||||||||||||| || | | ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
43045400 |
cgatgacagtgcagtagtacttggttgtctcaaacttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggaccca |
43045499 |
T |
|
| Q |
420 |
agcatacttgaatgaacgcatcttcatctca |
450 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |
|
|
| T |
43045500 |
ggcatacttgaatgaacgcttgttcatctca |
43045530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 123 - 450
Target Start/End: Original strand, 43045657 - 43045983
Alignment:
| Q |
123 |
aataccttgttgca---gcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttgca |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| | ||||| ||||||||||| | |||||||||||||||||| ||| |||| | |
|
|
| T |
43045657 |
aataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaa |
43045756 |
T |
|
| Q |
220 |
aactgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcat |
319 |
Q |
| |
|
||| ||||||||||| |||| ||||| ||||| ||||||| ||| || ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43045757 |
aaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaa----tgaaatccctgtgtccgggggcat |
43045852 |
T |
|
| Q |
320 |
caatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcaccca |
419 |
Q |
| |
|
| |||| ||||| |||||||||||||||||||||| || | | ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
43045853 |
cgatgacagtgcagtagtacttggttgtctcaaacttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggaccca |
43045952 |
T |
|
| Q |
420 |
agcatacttgaatgaacgcatcttcatctca |
450 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |
|
|
| T |
43045953 |
ggcatacttgaatgaacgcttgttcatctca |
43045983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 123 - 450
Target Start/End: Complemental strand, 43066750 - 43066424
Alignment:
| Q |
123 |
aataccttgttgca---gcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttgca |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| | ||||| ||||||||||| | |||||||||||||||||| ||| |||| | |
|
|
| T |
43066750 |
aataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaa |
43066651 |
T |
|
| Q |
220 |
aactgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcat |
319 |
Q |
| |
|
||| ||||||||||| |||| ||||| ||||| ||||||| ||| || |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43066650 |
aaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaat----gaaatccctgtgtccgggggcat |
43066555 |
T |
|
| Q |
320 |
caatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcaccca |
419 |
Q |
| |
|
| |||| ||||| |||||||||||||||||||||| || | | ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
43066554 |
cgatgacagtgcagtagtacttggttgtctcaaacttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaagaaccca |
43066455 |
T |
|
| Q |
420 |
agcatacttgaatgaacgcatcttcatctca |
450 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |
|
|
| T |
43066454 |
ggcatacttgaatgaacgcttgttcatctca |
43066424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 123 - 450
Target Start/End: Original strand, 43084085 - 43084411
Alignment:
| Q |
123 |
aataccttgttgca---gcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttgca |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| | ||||| ||||||||||| | |||||||||||||||||| ||| |||| | |
|
|
| T |
43084085 |
aataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaa |
43084184 |
T |
|
| Q |
220 |
aactgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcat |
319 |
Q |
| |
|
||| ||||||||||| |||| ||||| ||||| ||||||| ||| || ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43084185 |
aaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaa----tgaaatccctgtgtccgggggcat |
43084280 |
T |
|
| Q |
320 |
caatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcaccca |
419 |
Q |
| |
|
| |||| ||||| |||||||||||||||||||||| || | | ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
43084281 |
cgatgacagtgcagtagtacttggttgtctcaaacttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggaccca |
43084380 |
T |
|
| Q |
420 |
agcatacttgaatgaacgcatcttcatctca |
450 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |
|
|
| T |
43084381 |
ggcatacttgaatgaacgcttgttcatctca |
43084411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 246 - 450
Target Start/End: Complemental strand, 7890993 - 7890793
Alignment:
| Q |
246 |
agaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggtt |
345 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| | | | |||||| |
|
|
| T |
7890993 |
agaacagcacagtcagcttcggacgctccagtgatcatgttcttaat----gaaatccctgtgtccaggggcatcaatgagagtgcagcggaagttggtt |
7890898 |
T |
|
| Q |
346 |
gtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcatcttca |
445 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||| |
|
|
| T |
7890897 |
gtctcaaacttccacagagaaatgtcaattgtgatacctctttcacgctcggccttgagcttgtcaagcacccaagcatacttgaatgaatgcctgttca |
7890798 |
T |
|
| Q |
446 |
tctca |
450 |
Q |
| |
|
||||| |
|
|
| T |
7890797 |
tctca |
7890793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 123 - 450
Target Start/End: Original strand, 3300941 - 3301266
Alignment:
| Q |
123 |
aataccttgttgcagcaga--tcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttgcaa |
220 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||||||||||| | ||||| ||||| ||||| | |||||| |||||||| || ||| |||| || |
|
|
| T |
3300941 |
aataccttgttgcagcaaaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgatataccggcttcaaa |
3301040 |
T |
|
| Q |
221 |
actgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcatc |
320 |
Q |
| |
|
|| |||||||||| |||| ||||||||||| ||||||| ||| || || || ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3301041 |
accaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaa----tgaaatccctgtgtccgggggcatc |
3301136 |
T |
|
| Q |
321 |
aatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaa |
420 |
Q |
| |
|
||||| ||||| ||||||| || ||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
3301137 |
aatgacagtgcagtagtacttagtagtctcaaacttccacagagcaatgtcaattgtgatacctctttcacattcagccttgagcttgtcgagcacccaa |
3301236 |
T |
|
| Q |
421 |
gcatacttgaatgaacgcatcttcatctca |
450 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |
|
|
| T |
3301237 |
gcatacttgaatgaacgcttgttcatctca |
3301266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 246 - 437
Target Start/End: Complemental strand, 7888728 - 7888541
Alignment:
| Q |
246 |
agaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggtt |
345 |
Q |
| |
|
||||||||||| |||||||| || | |||||||||||||||||| || |||||||||||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
7888728 |
agaacagcacaatcagcttcagacgccccggtgatcatgttcttgat----gaaatccctgtgtccgggggcatcaatgagagtgcagcagtagctggtt |
7888633 |
T |
|
| Q |
346 |
gtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatacttgaatgaacg |
437 |
Q |
| |
|
|||| |||||| || | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
7888632 |
gtctgaaacttccaaagagaaatgtcaattgtgatacctctttcacgctcagccttgagtttgtcaagcacccaagcatacttgaataaacg |
7888541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 179 - 450
Target Start/End: Original strand, 51291885 - 51292151
Alignment:
| Q |
179 |
atgttcccaggtctgaccatccttagaccaaccagcttgcaaactgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccggtg |
278 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||||| || | | ||| ||||||| | || |||| | |||||||||||| | | | ||||| | |
|
|
| T |
51291885 |
atgttcaccggtctgaccatccttagaataaccagcttcaaacccgccagttgtggaatcaaggatgagaataacacagtcagcttggaacggcccggcg |
51291984 |
T |
|
| Q |
279 |
atcatgttcttaattaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtg |
378 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||| |||||| |||||||| |||| ||||||||| | | ||||||||||||||| |
|
|
| T |
51291985 |
atcatgttcttaat----gaaattcccatgtccgggggcatcaatgagagtgcaatagtacttgattgt-tcaaacttggatagagaaatgtcaattgtg |
51292079 |
T |
|
| Q |
379 |
atacctctttcacgctcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcatcttcatctca |
450 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
51292080 |
atacctctttcacgctcagccttgaacttgtcaagcacccaagcatacgtgaatgaacgcatgttcatctca |
51292151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 246 - 450
Target Start/End: Complemental strand, 40034647 - 40034449
Alignment:
| Q |
246 |
agaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggtt |
345 |
Q |
| |
|
|||||||||||||||||| ||| || ||||| | ||||||||| || |||||| ||||||||||||| |||||||| ||||| ||| |||||| |
|
|
| T |
40034647 |
agaacagcacagtcagctagggacgtgccggttaacatgttcttgat----gaaatc--tgtgtccgggggcgtcaatgagagtgcagtggtatttggtt |
40034554 |
T |
|
| Q |
346 |
gtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcatcttca |
445 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | |||| |
|
|
| T |
40034553 |
gtctcaaacttggacatggaaatatcaattgtaacacctctttcacgctcagccttgagcttgtcaagtacccaagcatacttgaatgagcgcttgttca |
40034454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 435
Target Start/End: Complemental strand, 43076737 - 43076553
Alignment:
| Q |
246 |
agaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggtt |
345 |
Q |
| |
|
|||| |||||| ||||||| ||| ||||| ||||||||||||||||| ||||| | ||||||| ||| ||||||||| ||| |||| ||| ||| |
|
|
| T |
43076737 |
agaagagcacaatcagcttgggacgtcccagtgatcatgttcttaat----gaaattcttgtgtcccgggacatcaatgacaacgcagcagttctttgtt |
43076642 |
T |
|
| Q |
346 |
gtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatacttgaatgaa |
435 |
Q |
| |
|
||||||||||| || | ||||| ||||| || |||||||||||||| |||||| ||||||||||||| | ||| |||||||||| |||| |
|
|
| T |
43076641 |
gtctcaaacttccagagagaaatctcaatggt-atacctctttcacgttcagccctgagcttgtcaaggatccaggcatacttgactgaa |
43076553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 40034885 - 40034809
Alignment:
| Q |
18 |
cttagagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattactt-atataaatgaattataaa |
96 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| |||||||||| ||||||| ||||| ||||||||||| |||||| |
|
|
| T |
40034885 |
cttagagtatttgggtgtagttgcatccatctgtcaagatagatg---ataattagtacttaatataaatgaactataaa |
40034809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 40034767 - 40034689
Alignment:
| Q |
123 |
aataccttgttgca---gcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccat |
198 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| || ||||| ||||||||||| ||||||||||| |
|
|
| T |
40034767 |
aataccttgttgcagcagcagatcatttgattcacaccaagagtataggcaagaagagcatgttcagtggtctgaccat |
40034689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 43066818 - 43066782
Alignment:
| Q |
68 |
aattattacttatataaatgaattataaaaataataa |
104 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
43066818 |
aattagtacttaaataaatgaattataaaaataataa |
43066782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 43084017 - 43084053
Alignment:
| Q |
68 |
aattattacttatataaatgaattataaaaataataa |
104 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
43084017 |
aattagtacttaaataaatgaattataaaaataataa |
43084053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 134 - 450
Target Start/End: Original strand, 4231691 - 4232003
Alignment:
| Q |
134 |
gcagcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttgcaaactgagagtagtg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||| ||||||||||| | |||||||||||||| || |||||||| |||| ||| ||| |
|
|
| T |
4231691 |
gcagcagatcatttgcctcacaccaagagtgaaagcaaggagagcatgttcacgagtctgaccatccttggaaataccagcttcaaaaccaccagtggtg |
4231790 |
T |
|
| Q |
234 |
gaattgatgactagaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcatcaatgagggtgcaa |
333 |
Q |
| |
|
|||| |||| ||||||||||| ||||||| ||| || || || ||||||||||||| |||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
4231791 |
gaatcaatgatgagaacagcacaatcagcttgggatgtaccagtaatcatgttcttaa----tgaaatccctgtgtccaggggcatcaatgacagtgcag |
4231886 |
T |
|
| Q |
334 |
cagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatacttgaatg |
433 |
Q |
| |
|
||||||| || ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
4231887 |
tagtacttagtggtctcaaacttccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttaaatg |
4231986 |
T |
|
| Q |
434 |
aacgcatcttcatctca |
450 |
Q |
| |
|
||||| | ||||||||| |
|
|
| T |
4231987 |
aacgcttgttcatctca |
4232003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 246 - 450
Target Start/End: Original strand, 4620026 - 4620226
Alignment:
| Q |
246 |
agaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggtt |
345 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
4620026 |
agaacagcacagtcagcttgggatgttccggtgatcatgttcttaa----tgaaatctctgtgtccgggggcatcaatgagagtgcagtagtacttggtt |
4620121 |
T |
|
| Q |
346 |
gtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcatcttca |
445 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || | |
|
|
| T |
4620122 |
gtctcaaacttggacagagaaatgtcgattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatatttgaatgaacacatgttta |
4620221 |
T |
|
| Q |
446 |
tctca |
450 |
Q |
| |
|
||||| |
|
|
| T |
4620222 |
tctca |
4620226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 246 - 438
Target Start/End: Original strand, 1846728 - 1846916
Alignment:
| Q |
246 |
agaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggtt |
345 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | | |||||| |
|
|
| T |
1846728 |
agaacggcacagtcagcttcggatgctccggtgatcatgttcttaat----gaaatccctgtgtccgggggcatcaatgagagtgcagaggaagttggtt |
1846823 |
T |
|
| Q |
346 |
gtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatacttgaatgaacgc |
438 |
Q |
| |
|
||||||||||| || | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1846824 |
gtctcaaacttccatagagaaatgtcaattgtgatacctctttcacgctcggccttgagcttgtcaagcacccaagcatacttgaatgaacgc |
1846916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 301 - 435
Target Start/End: Complemental strand, 4787408 - 4787274
Alignment:
| Q |
301 |
tccctgtgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagcct |
400 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| ||||||| |||||||||||||| |||| ||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
4787408 |
tccctgtgtccgggagcatcaatgacagtgcagttgtacttgtttgtctcaaacttggacatagaaatgtcaattgtggcacctctttcacgctcaccct |
4787309 |
T |
|
| Q |
401 |
tgagcttgtcaagcacccaagcatacttgaatgaa |
435 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
4787308 |
tgagtttgtcaagcacccaagcatacttgaatgaa |
4787274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 292 - 440
Target Start/End: Original strand, 4297851 - 4297999
Alignment:
| Q |
292 |
ttaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcac |
391 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||| |||| ||||||| |||||||||||||| ||| ||||||||||||||| |||||||||| |
|
|
| T |
4297851 |
ttaatgcattccctatgtccgggggcatcaatgacaatgcagttgtacttgtttgtctcaaacttggacagagaaatgtcaattgtggcacctctttcat |
4297950 |
T |
|
| Q |
392 |
gctcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcat |
440 |
Q |
| |
|
| ||||| ||||| |||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
4297951 |
ggtcagctttgagtttgtcaagtacccaagcatacttgaacgaaggcat |
4297999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 4297574 - 4297654
Alignment:
| Q |
22 |
gagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataat |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | ||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
4297574 |
gagtatttgggtgtagtggcatccatctgtgaagatagatgatgataattagtatttatacaaatgaattataaaaataat |
4297654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 4619776 - 4619861
Alignment:
| Q |
17 |
acttagagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataataat |
105 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||| | |||||||||| | ||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
4619776 |
acttggagtatttgggtgcagtggcatccatctatcaagatagatg---aaaattagtaattatataaatgaataataaaaataataat |
4619861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 4787535 - 4787457
Alignment:
| Q |
123 |
aataccttgttgca---gcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccat |
198 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||| |||| | ||||| ||||||||||| ||||||||||| |
|
|
| T |
4787535 |
aataccttgttgcagcagcagatcatttgcttcacaccaacagtgaaggcaagaagagcatgttcaagggtctgaccat |
4787457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 246 - 431
Target Start/End: Original strand, 16349475 - 16349656
Alignment:
| Q |
246 |
agaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggtt |
345 |
Q |
| |
|
|||| |||||| ||||||| ||| ||||| || ||||||||||||| |||||||||||||||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
16349475 |
agaagagcacaatcagcttgggatgtcccagtaatcatgttcttaa----tgaaatccctgtgtccgggggcatcaatgatagtgcagcggtacttggtt |
16349570 |
T |
|
| Q |
346 |
gtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatacttgaa |
431 |
Q |
| |
|
|||||||| || |||| ||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
16349571 |
gtctcaaaattcaacatagaattgtcaattgtgatacctctttcgcgctcagccttgagtttgtcaagaacccacgcatacttgaa |
16349656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 16349337 - 16349427
Alignment:
| Q |
111 |
gctgaaaatgtcaataccttgttgcag---cagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccat |
198 |
Q |
| |
|
||||||||| | ||||||||||||||| |||||||||||| | |||||||||| ||| ||| | ||||||||||| | | ||||||||| |
|
|
| T |
16349337 |
gctgaaaatatgaataccttgttgcagcagcagatcatttgcttgacaccaagagagtaagcatggagagcatgttcacggatctgaccat |
16349427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 450
Target Start/End: Complemental strand, 7528982 - 7528839
Alignment:
| Q |
307 |
tgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagct |
406 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||||||| |||||||| || |||| || ||| || || || || |||||||||||||||||||| || | |
|
|
| T |
7528982 |
tgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaaggcaatatcgatggtaattcctctttcacgctcagccttaagtt |
7528883 |
T |
|
| Q |
407 |
tgtcaagcacccaagcatacttgaatgaacgcatcttcatctca |
450 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| | ||||||||| |
|
|
| T |
7528882 |
tgtcaagaacccatgcatacttgaatgaacgcttgttcatctca |
7528839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 138 - 431
Target Start/End: Complemental strand, 7519776 - 7519487
Alignment:
| Q |
138 |
cagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttgcaaactgagagtagtggaat |
237 |
Q |
| |
|
|||||||| ||| |||| |||||||| | ||||| |||||||| || | |||||| ||||||||||| |||||||| |||| ||| ||||| | |
|
|
| T |
7519776 |
cagatcatctgcttcactccaagagtaaatgcaagaagagcatgctcacgggtctgtccatccttagagataccagcttcaaaaccaccagtggtggagt |
7519677 |
T |
|
| Q |
238 |
tgatgactagaacagcacagtcagcttcggaggtcccggtgatcatgttcttaattaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagt |
337 |
Q |
| |
|
|||| || |||||||| ||||| | |||||| || || ||||||||||| || |||||| | |||||||| |||||||||| ||||| ||| |
|
|
| T |
7519676 |
caatgataaggacagcacaatcagcctgggaggttccagtaatcatgttcttgat----gaaatcacgatgtccgggagcatcaatgactgtgcagtagt |
7519581 |
T |
|
| Q |
338 |
acttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatacttgaa |
431 |
Q |
| |
|
||||||| |||||||| || |||| | ||| ||||| || || |||||||||||||||||||| ||||||||||| ||||| || |||||||| |
|
|
| T |
7519580 |
acttggtggtctcaaatttccacaaagcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaa |
7519487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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