View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15401_low_23 (Length: 441)

Name: NF15401_low_23
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15401_low_23
NF15401_low_23
[»] chr3 (2 HSPs)
chr3 (16-425)||(48235636-48236045)
chr3 (85-300)||(50439335-50439550)
[»] chr1 (2 HSPs)
chr1 (20-318)||(3686562-3686860)
chr1 (86-300)||(1273956-1274170)
[»] chr2 (3 HSPs)
chr2 (88-159)||(45728271-45728342)
chr2 (215-336)||(42673868-42673989)
chr2 (91-132)||(42674072-42674113)
[»] chr8 (2 HSPs)
chr8 (215-322)||(6516733-6516840)
chr8 (95-135)||(6516920-6516960)
[»] scaffold0229 (1 HSPs)
scaffold0229 (86-208)||(56-178)


Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Original strand, 48235636 - 48236045
Alignment:
Q  16 cataggaggcctggctgtgattatctgcagtagcattatccctaatgaatatatatctgattttggtgttaacattcctgtttgttgatactcgggatca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235636 cataggaggcctggctgtgattatctgcagtagcattatccctaatgaatatatatctgattttggtgttaacattcctgtttgttgatactcgggatca 48235735  T
Q  116 atataacaaaatgttccagcagctgaagtcatgtaatattgtgtcacgctgtcagctacagaaggaggaactaatcttgcgagaccgacatcagcgactt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235736 atataacaaaatgttccagcagctgaagtcatgtaatattgtgtcacgctgtcagctacagaaggaggaactaatcttgcgagaccgacatcagcgactt 48235835  T
Q  216 tgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggctttgtttggtgaaggaaaagaagtgcagttgc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235836 tgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggctttgtttggtgaaggaaaagaagtgcagttgc 48235935  T
Q  316 aatctcagctgctattttgaaccttttttgccatgatagaggcttagagttatttttccgaaataatctatcttctaaggtaccgttttccatgtactca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235936 aatctcagctgctattttgaaccttttttgccatgatagaggcttagagttatttttccgaaataatctatcttctaaggtaccgttttccatgtactca 48236035  T
Q  416 tacaccaaac 425  Q
    ||||||||||    
T  48236036 tacaccaaac 48236045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 300
Target Start/End: Original strand, 50439335 - 50439550
Alignment:
Q  85 taacattcctgtttgttgatactcgggatcaatataacaaaatgttccagcagctgaagtcatgtaatattgtgtcacgctgtcagctacagaaggagga 184  Q
    ||||||||||||||| |||||||| ||||| |||||||| |||||||| || | ||  ||||||  |||||| ||||| ||||| || ||||| || |||    
T  50439335 taacattcctgtttgctgatactcaggatctatataacagaatgttcctgctgttgccgtcatgcgatattgcgtcacactgtcggccacagatggcgga 50439434  T
Q  185 actaatcttgcgagaccgacatcagcgactttgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggct 284  Q
    || | |||||| | ||| ||||||   | ||||   || || ||| |||||| ||| ||||||  |||||| | ||||| ||| || || || ||||| |    
T  50439435 acaagtcttgccaaaccaacatcactaattttggctacatagtttctgtctagcaagatgtttcctggtttcaagtctctatgtactataggttctggtt 50439534  T
Q  285 ttgtttggtgaaggaa 300  Q
    ||||||||||||||||    
T  50439535 ttgtttggtgaaggaa 50439550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 3686860 - 3686562
Alignment:
Q  20 ggaggcctggctgtgattatctgcagtagcattatccctaatgaatatatatctgattttggtgttaacattcctgtttgttgatactcgggatcaatat 119  Q
    |||||| | |||||||| || || || | |||||||||||| ||||| ||||||||||||| ||||||  ||||||| | ||||||||| |||||||| |    
T  3686860 ggaggcttagctgtgataatttgaagaaacattatccctaaagaataaatatctgattttgttgttaattttcctgtattttgatactctggatcaatgt 3686761  T
Q  120 aacaaaatgttccagcagctgaagtcatgtaatattgtgtcacgctgtcagctacagaaggaggaactaatcttgcgagaccgacatcagcgactttgct 219  Q
    |||| ||||||||||| |||  |||||||| ||||||||| ||    |||||||||||||| || ||||||||||| | ||| ||||||   | ||||||    
T  3686760 aacataatgttccagctgcttcagtcatgtgatattgtgtgacagaatcagctacagaaggtggtactaatcttgctaaaccaacatcacttattttgct 3686661  T
Q  220 cacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggctttgtttggtgaaggaaaagaagtgcagttgcaat 318  Q
     ||  ||||||||||||| | |||||| | |||||||||||||| ||| || ||||  ||||| |||||||||||||||||||||||||| ||||||||    
T  3686660 aacaaaatttttgtctaagagaatgttggctggtttaaggtctctatgaacaattgcttctggttttgtttggtgaaggaaaagaagtgctgttgcaat 3686562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 300
Target Start/End: Complemental strand, 1274170 - 1273956
Alignment:
Q  86 aacattcctgtttgttgatactcgggatcaatataacaaaatgttccagcagctgaagtcatgtaatattgtgtcacgctgtcagctacagaaggaggaa 185  Q
    ||||||||||| ||||| ||||| ||||| || ||||| |||||||| ||||| || |||||   ||||||||||||  |||| ||||| || || || |    
T  1274170 aacattcctgtctgttggtactcaggatctatgtaacagaatgttccggcagccgatgtcattcgatattgtgtcacattgtctgctactgatggcggta 1274071  T
Q  186 ctaatcttgcgagaccgacatcagcga-ctttgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggct 284  Q
    ||| |||||| | ||| ||||||   | ||||||  ||||| ||   ||| | ||| ||||||| |||||||||||||| ||| || | |||||| || |    
T  1274070 ctagtcttgccaaaccaacatcactaatctttgc-gacgtagttgcggtcaagcaagatgtttgctggtttaaggtctctatgtactagtggctcaggtt 1273972  T
Q  285 ttgtttggtgaaggaa 300  Q
    |||||||||| |||||    
T  1273971 ttgtttggtggaggaa 1273956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 45728342 - 45728271
Alignment:
Q  88 cattcctgtttgttgatactcgggatcaatataacaaaatgttccagcagctgaagtcatgtaatattgtgt 159  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| || ||||| |||||| || |||||||    
T  45728342 cattcctgtttgctgatactcgggatcaatataacagaatgttcccgctgctgatgtcatgcaacattgtgt 45728271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 336
Target Start/End: Complemental strand, 42673989 - 42673868
Alignment:
Q  215 ttgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggctttgtttggtgaaggaaaagaagtgcagttg 314  Q
    ||||| ||||| ||| ||||||| | |||||||| |||||| || || |||||||| |  || ||||| ||||| |||||||||||||||||  | || |    
T  42673989 ttgcttacgtagtttctgtctaagagaatgtttgctggtttgagatcgcgatgcacaaccggttctggttttgtctggtgaaggaaaagaaggcctgtcg 42673890  T
Q  315 caatctcagctgctattttgaa 336  Q
    ||||||| | ||||||||||||    
T  42673889 caatctctgatgctattttgaa 42673868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 42674113 - 42674072
Alignment:
Q  91 tcctgtttgttgatactcgggatcaatataacaaaatgttcc 132  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  42674113 tcctgtttgttgatactccggatcaatataaaaaaatgttcc 42674072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 322
Target Start/End: Complemental strand, 6516840 - 6516733
Alignment:
Q  215 ttgctcacgtaatttttgtctaacaaaatgtttgatggtttaaggtctcgatgcacgattggctctggctttgtttggtgaaggaaaagaagtgcagttg 314  Q
    ||||| ||||| ||||||||||| | |||||||  |||||| |  || ||||| || ||||| |||||||||| ||||||||||||||||||  |||| |    
T  6516840 ttgctaacgtagtttttgtctaagagaatgtttcctggtttcatatcacgatgtactattggatctggctttgattggtgaaggaaaagaaggccagtgg 6516741  T
Q  315 caatctca 322  Q
    ||||||||    
T  6516740 caatctca 6516733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 6516960 - 6516920
Alignment:
Q  95 gtttgttgatactcgggatcaatataacaaaatgttccagc 135  Q
    |||||||||||||| |||||||| || ||||||||||||||    
T  6516960 gtttgttgatactcaggatcaatgtagcaaaatgttccagc 6516920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 178 - 56
Alignment:
Q  86 aacattcctgtttgttgatactcgggatcaatataacaaaatgttccagcagctgaagtcatgtaatattgtgtcacgctgtcagctacagaaggaggaa 185  Q
    ||||||||||| ||||| ||||| ||||| || ||||| |||||||| ||||| || |||||   ||||||||||||  |||| ||||| || || || |    
T  178 aacattcctgtctgttggtactcaggatctatgtaacagaatgttccggcagccgatgtcattcgatattgtgtcacattgtctgctactgatggcggta 79  T
Q  186 ctaatcttgcgagaccgacatca 208  Q
    ||| |||||| | ||| ||||||    
T  78 ctagtcttgccaaaccaacatca 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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