View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15401_low_25 (Length: 419)
Name: NF15401_low_25
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_25 |
 | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0267 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 412
Target Start/End: Complemental strand, 23871 - 23479
Alignment:
| Q |
20 |
gtatcccctcccatagctgactgtgaatgaactatttttaggggcgaaccacaaaactcttctccatccagctcagcagctcttttggcagcattggagg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23871 |
gtatcccctcccatagctgactgtgaatgaactatttttaggggcgaaccacaaaactcttctccatccagctcagcagctcttttggcagcattggagg |
23772 |
T |
|
| Q |
120 |
tcataaatgttatcctgccccattttgctttatcctcaacatctttcaccatgcctgtgaacttttgcatgtcacatatacaaccaaaagtatttttctc |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23771 |
tcataaatgttatcttgccccattttgctttatcctcaacatctttcaccatgcctgtgaacttttgcatgtcacatatacaaccagaagtatttttctc |
23672 |
T |
|
| Q |
220 |
aaaaaacatcaggagctccatttcgtcaattgcatttacgtttgggtgaaacacatcaacactcaagggaagcttctcaagttccaaatgctttatctca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23671 |
aaaaaacatcaggagctccatttcgtcaattgcatttacgtttgggtgaaacacatcaacactcaagggaagcttctcaagttccaaatgctttatctca |
23572 |
T |
|
| Q |
320 |
gcaccagagccaaacatagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacctcttcatctca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23571 |
gcaccagagccaaacatagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacctcttcttctca |
23479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 412
Target Start/End: Complemental strand, 3879959 - 3879567
Alignment:
| Q |
20 |
gtatcccctcccatagctgactgtgaatgaactatttttaggggcgaaccacaaaactcttctccatccagctcagcagctcttttggcagcattggagg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879959 |
gtatcccctcccatagctgactgtgaatgaactatttttaggggcgaaccacaaaactcttctccatccagctcagcagctcttttggcagcattggagg |
3879860 |
T |
|
| Q |
120 |
tcataaatgttatcctgccccattttgctttatcctcaacatctttcaccatgcctgtgaacttttgcatgtcacatatacaaccaaaagtatttttctc |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3879859 |
tcataaatgttatcttgccccattttgctttatcctcaacatctttcaccatgcctgtgaacttttgcatgtcacatatacaaccagaagtatttttctc |
3879760 |
T |
|
| Q |
220 |
aaaaaacatcaggagctccatttcgtcaattgcatttacgtttgggtgaaacacatcaacactcaagggaagcttctcaagttccaaatgctttatctca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879759 |
aaaaaacatcaggagctccatttcgtcaattgcatttacgtttgggtgaaacacatcaacactcaagggaagcttctcaagttccaaatgctttatctca |
3879660 |
T |
|
| Q |
320 |
gcaccagagccaaacatagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacctcttcatctca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3879659 |
gcaccagagccaaacatagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacctcttcttctca |
3879567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 21 - 405
Target Start/End: Original strand, 39319711 - 39320096
Alignment:
| Q |
21 |
tatcccctcccatagctgactgtgaatgaactatttttaggggcgaaccacaaaactcttctccatccagctcagcagctcttttggcagcattggaggt |
120 |
Q |
| |
|
|||||||||| ||| |||| |||||| ||| |||||| | || || || |||||||| |||||||||||||| ||||||||||||||||||| | || |
|
|
| T |
39319711 |
tatcccctccaataactgaatgtgaaggaagtattttcaaggaggagccgcaaaactcctctccatccagctctgcagctcttttggcagcatcagggga |
39319810 |
T |
|
| Q |
121 |
cataaatgttatcctgccccattttgctttatcctcaacatctttcaccatgcctgtgaacttttgcatgtcacatatacaaccaaaagtatttttctca |
220 |
Q |
| |
|
| |||||||||| ||||||| ||| || ||||||||||||| ||||||||||| | |||||| | || ||||||||||||| | ||||| ||||| |
|
|
| T |
39319811 |
cgaaaatgttatcttgccccacttttctctatcctcaacatccttcaccatgccagggaacttgtacactgcacatatacaacctgaggtattcttctcc |
39319910 |
T |
|
| Q |
221 |
aaaaacatcaggagctccatttcgtcaattgcatttacgttt-gggtgaaacacatcaacactcaagggaagcttctcaagttccaaatgctttatctca |
319 |
Q |
| |
|
|||||||||||||||||| | || | |||| |||||| |||| |||||| |||||||||||||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
39319911 |
aaaaacatcaggagctccttatcattaatttcatttatgttttgggtgacacacatcaacactcaatgaatgcttctcaagttccaaatgctttatctca |
39320010 |
T |
|
| Q |
320 |
gcaccagagccaaacatagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacctctt |
405 |
Q |
| |
|
|||||||| ||||||| || | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39320011 |
gcaccagacccaaacaatgctataggtgatgaggaacctgacccatgatacaaacatttttccatacattcagtgcgtaacctctt |
39320096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University