View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_27 (Length: 379)
Name: NF15401_low_27
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6240748 - 6240968
Alignment:
| Q |
1 |
cactatgtagtagataatagaatcatttttatcttaaaagttagatggaagaatattagaagcattaatgttacttctaaaaataaatcaagcacaattt |
100 |
Q |
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| T |
6240748 |
cactatgtagtagacaatagaagcatttttatcttaaaagttagatggaagaatattagaagcattaatgttacttctaaaagtaa-tcaatcacaattt |
6240846 |
T |
|
| Q |
101 |
caagtagattcgtgaaaaagtcgttcgcatccagattggcttataattttagaacattcatcagagaggagataggaaattgtgttggaaaaagaataat |
200 |
Q |
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| T |
6240847 |
caagtagattcgtgaaaaagtcgttcgcatccggattggcttataattttagaacattcatcagagaggagataggaaattgtgttggaaaaagaataat |
6240946 |
T |
|
| Q |
201 |
tttattttcatttgtatccttc |
222 |
Q |
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||||||||||||| |||||||| |
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| T |
6240947 |
tttattttcatttttatccttc |
6240968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 6211909 - 6212075
Alignment:
| Q |
55 |
attagaagcattaatgttacttctaaaaataaatcaagcacaatttcaagtagattcgtgaaaaagtcgttcgcatccagattggcttataattttagaa |
154 |
Q |
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| T |
6211909 |
attagaagcattaatgttacttctaaaaataa-tcaatcacaatttcatgtagattcgtgaaaaagttgttcgcatccggattggcttataattttagaa |
6212007 |
T |
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| Q |
155 |
cattcatcagagaggagataggaaattgtgttggaaaaagaataattttattttcatttgtatccttc |
222 |
Q |
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| T |
6212008 |
cattcatcagagaggagataggaaattgtgttggaaaaagaataattttgttttcatttgtatccttc |
6212075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 6241033 - 6241104
Alignment:
| Q |
287 |
ttttaaaaggtttcgctaacaaatgtcagtgatttaaaaattaaaacaattgttactttcatgtataaaaaa |
358 |
Q |
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| T |
6241033 |
ttttaaagggtttcgctaacaaatgtcagtgatttaaaaatgaaaacaattgttactttcatgtataaaaaa |
6241104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 6211812 - 6211890
Alignment:
| Q |
1 |
cactatgtagtagataatagaatcatttttatcttaaaagttaga-------tggaagaatattagaagcattaatgtt |
72 |
Q |
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| T |
6211812 |
cactatgtagtagataatagaagcatttttatcttagaagttagatggaacttggaagaatattagaagcattaatgtt |
6211890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 6212141 - 6212177
Alignment:
| Q |
319 |
tttaaaaattaaaacaattgttactttcatgtataaa |
355 |
Q |
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| T |
6212141 |
tttaaaaatgaaaacaattgttattttcatgtataaa |
6212177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 19115898 - 19115708
Alignment:
| Q |
1 |
cactatgtagtagataatagaatcatttttatcttaaaagttagatggaagaatattagaagcattaatgttacttctaaaaataaatcaagcacaattt |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||| |||||||||| || |||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
19115898 |
cactatgcagtagataatagaagcattttcatctcaaaagttagaagggtgaatattagaagcattaatgttacttctaaaaatcaatcaatcacaattt |
19115799 |
T |
|
| Q |
101 |
caagtagattcgtga---aaaagtcgttcgcatccagattggcttataattttagaacattcatcagagaggagataggaaattgtgttgg |
188 |
Q |
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| T |
19115798 |
caagtagattcgtgaagtaatattccttcacattcggcttgtcttataattttagaatcttcatcaaagaggagataggaaattgtgttgg |
19115708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 19610095 - 19610268
Alignment:
| Q |
1 |
cactatgtagtagataatagaatcatttttatcttaaaagttagatggaagaatattagaagcattaatgttacttctaaaaataaatcaagcacaattt |
100 |
Q |
| |
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||||||| |||||||||||||| ||||||||||| |||||||||| | ||||||||||| ||| ||||||||||||||||||||||||| |||||||| |
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| T |
19610095 |
cactatgcagtagataatagaagcatttttatctcaaaagttagaagagggaatattagaaacatcaatgttacttctaaaaataaatcaatcacaattt |
19610194 |
T |
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| Q |
101 |
caagtagattcgtgaaaaagtcgttcgcatccagattggcttataattttagaacattcatcagagaggagata |
174 |
Q |
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||||||||| |||| | | || |||||||| || ||| |||||||||| |||| |||||||||||||||||| |
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| T |
19610195 |
taagtagatttgtgacataatccttcgcatctagcttgccttataatttcagaatcttcatcagagaggagata |
19610268 |
T |
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