View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_31 (Length: 352)
Name: NF15401_low_31
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 340
Target Start/End: Original strand, 7596423 - 7596758
Alignment:
| Q |
5 |
catcaagttaataaaataattttgcaattttaaaaagttgaacataccannnnnnnnaaaaatttaatgcaaaatttttatattaatcttcttaactagt |
104 |
Q |
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| T |
7596423 |
catcaaattaataaaataattttggattttaaaaaaattgaacataccactttttcaaaagatttaatgcaaaatttttatattaatcttcttaattagt |
7596522 |
T |
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| Q |
105 |
gttccggtggcaccagttaacattttccttattgaaaaacattctcaagaaatgttgaaattattaggtcgaactctctaattgggatttgaataggatt |
204 |
Q |
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| T |
7596523 |
atcccggtggcaccaattaacatttcccttattgaaaaacattctcaagaaatgttgaaattgttaggtcgaactctctaattggaatttgaatataatt |
7596622 |
T |
|
| Q |
205 |
tcttcacttatttgtatgagttttaaaataactattgttatttcgtttatctaaaaagaaaatatatttgttgaagaagcttccattgcctctcccaaat |
304 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | | ||||||| |
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| T |
7596623 |
tcttcatttatttgtatgagttttaaaataactattgttatttcgtttatctaaaaagaaaatatattttttgaagaagcttacattagcccacccaaat |
7596722 |
T |
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| Q |
305 |
tgatagcggagagaattaaacctgagatgttgatgg |
340 |
Q |
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| T |
7596723 |
tgacagcggagataattaaacctgatacgttgatgg |
7596758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 8257314 - 8257378
Alignment:
| Q |
70 |
aatgcaaaatttttatattaatcttcttaactagtgttccggtggcaccagttaacattttcctt |
134 |
Q |
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| T |
8257314 |
aatgcaaagtttctatattaatctccttaactattgtcccgggggcatcagttaacatttccctt |
8257378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 37807268 - 37807232
Alignment:
| Q |
69 |
taatgcaaaatttttatattaatcttcttaactagtg |
105 |
Q |
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| T |
37807268 |
taatgcataatttctatattaatcttcttaactagtg |
37807232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 11777187 - 11777124
Alignment:
| Q |
69 |
taatgcaaaatttttatattaatcttcttaactagtgttccggtggcaccagttaacattttcc |
132 |
Q |
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| T |
11777187 |
taatgcaagatttctatattaatcaccttaactagtgtcccaatggcactagttaacattttcc |
11777124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 48256751 - 48256788
Alignment:
| Q |
95 |
cttaactagtgttccggtggcaccagttaacattttcc |
132 |
Q |
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| T |
48256751 |
cttaactagtgttccggaggcaccggttaacattttcc |
48256788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 17268575 - 17268612
Alignment:
| Q |
67 |
tttaatgcaaaatttttatattaatcttcttaactagt |
104 |
Q |
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| T |
17268575 |
tttaatgcaaaatttttatattaatctccttaattagt |
17268612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 40197704 - 40197741
Alignment:
| Q |
70 |
aatgcaaaatttttatattaatcttcttaactagtgtt |
107 |
Q |
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| T |
40197704 |
aatgcataatttctatattaatcttcttaactagtgtt |
40197741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 52201330 - 52201294
Alignment:
| Q |
69 |
taatgcaaaatttttatattaatcttcttaactagtg |
105 |
Q |
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|||| |||||||| ||||||||||||||||||||||| |
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| T |
52201330 |
taatccaaaatttatatattaatcttcttaactagtg |
52201294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 53706650 - 53706622
Alignment:
| Q |
70 |
aatgcaaaatttttatattaatcttctta |
98 |
Q |
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| T |
53706650 |
aatgcaaaatttttatattaatcttctta |
53706622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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