View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_35 (Length: 342)
Name: NF15401_low_35
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 11156972 - 11156658
Alignment:
| Q |
19 |
caaaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaaca |
118 |
Q |
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| T |
11156972 |
caaaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactggaaatgaaccattttgtaaaagtgaaggtgaaca |
11156873 |
T |
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| Q |
119 |
agtgaatagaagaggggaaagctttgtgtttttccgaatcctcatctactttcactttcttctgtaccctttgcaagggtaaggcactatatatatcgac |
218 |
Q |
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| T |
11156872 |
agtgaatagaagaggggaaagctttgtgtttttccgaatcctcatctactttcactttcttctgtaccctttgcaagggtaaggcactatatatatcgac |
11156773 |
T |
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| Q |
219 |
cnnnnnnngtaagagtgaaaaaatacataca--ctagtttatgggggtaggtgtgggtaaacaataaaaagagtaagataattgaaagcacatgaacctt |
316 |
Q |
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| T |
11156772 |
ctttttttgtaagattgaaaaaatacaaacactctagtttgtgggggtaggtgtgggtaaacaataaaaagagtaagataattgaaagcacatgaacctt |
11156673 |
T |
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| Q |
317 |
attttatactttctt |
331 |
Q |
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| T |
11156672 |
attttatactttctt |
11156658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 11163931 - 11163786
Alignment:
| Q |
18 |
acaaaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaac |
117 |
Q |
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| T |
11163931 |
acaaaggggatcacatcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtagcaatgaagatgaac |
11163832 |
T |
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| Q |
118 |
aagtgaatagaagaggggaaagctttgtgtttttccgaatcctcat |
163 |
Q |
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| T |
11163831 |
aagtgaatagaagaggggaaagtttagcgtttttacgaatcctcat |
11163786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 11175039 - 11174971
Alignment:
| Q |
263 |
gtaggtgtgggtaaacaataaaaagagtaagataattgaaagcacatgaaccttattttatactttctt |
331 |
Q |
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| T |
11175039 |
gtaggtgtgggtaaacactaaaaagattaagataattgaaagcacataaaccttattttatgctttctt |
11174971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 11176746 - 11176672
Alignment:
| Q |
25 |
ggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccatttt |
99 |
Q |
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| T |
11176746 |
ggataacatcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatgaaccatttt |
11176672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 4703888 - 4704031
Alignment:
| Q |
20 |
aaaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaacaa |
119 |
Q |
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| T |
4703888 |
aaaggggatggcatcccatggagattggttaagctgacaaacgtgcatttgaaaaggttcaaccggtaatgaatcattttgtagtagtgaagacgaacaa |
4703987 |
T |
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| Q |
120 |
gtgaatagaagaggggaaagctttgtgtttttccgaatcctcat |
163 |
Q |
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| T |
4703988 |
gtgaatagaagaggggaaatcttcgcggcttttcgaatcctcat |
4704031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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