View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15401_low_36 (Length: 336)

Name: NF15401_low_36
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15401_low_36
NF15401_low_36
[»] chr3 (6 HSPs)
chr3 (19-326)||(47193463-47193770)
chr3 (191-325)||(9792564-9792698)
chr3 (151-218)||(47212255-47212322)
chr3 (19-206)||(26750884-26751071)
chr3 (19-209)||(26736948-26737138)
chr3 (19-209)||(26713712-26713902)
[»] chr7 (7 HSPs)
chr7 (185-326)||(6609317-6609458)
chr7 (185-326)||(6624663-6624804)
chr7 (148-262)||(21130440-21130554)
chr7 (151-227)||(18658605-18658681)
chr7 (151-218)||(29213017-29213084)
chr7 (148-202)||(21098712-21098766)
chr7 (148-262)||(21123312-21123426)
[»] chr4 (1 HSPs)
chr4 (148-209)||(39132235-39132296)
[»] chr1 (1 HSPs)
chr1 (165-202)||(11791111-11791148)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 47193770 - 47193463
Alignment:
Q  19 cattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatcagcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193770 cattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatcagcaa 47193671  T
Q  119 cctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193670 cctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 47193571  T
Q  219 agctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193570 agctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaa 47193471  T
Q  319 agcctatg 326  Q
    ||||||||    
T  47193470 agcctatg 47193463  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 191 - 325
Target Start/End: Complemental strand, 9792698 - 9792564
Alignment:
Q  191 actcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaaga 290  Q
    |||||||| |||||||||| |||||||||| |||| ||||| |||  ||||| |||||||||||||||| |||||||||||||||||||||  |||| ||    
T  9792698 actcttcaagtaaataagcgaaacctttagttgttgcaacaactatcttaaatctcttattccaatcaactgaattagaacatagattctcaactaatga 9792599  T
Q  291 accatgttctatatactcatagaccaaaagcctat 325  Q
    ||||||||| ||||||||||| |||||||| ||||    
T  9792598 accatgttccatatactcataaaccaaaagtctat 9792564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 47212255 - 47212322
Alignment:
Q  151 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 218  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  47212255 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatggatataagccaaaccttt 47212322  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 26750884 - 26751071
Alignment:
Q  19 cattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatcagcaa 118  Q
    |||||||||||||| ||||||||||||||||  || || || |||   ||| ||||| | ||||| ||||||||||| || || | |||||||||||| |    
T  26750884 cattcaggtgccatgtaacctcttgtccctcgaatcctcgagaaatttgaattatcaaggtcatccctattcaatagcttggacagaccaaaatcagcta 26750983  T
Q  119 cctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaata 206  Q
    |||| |||||  |||  | |||||  |  || ||||| ||||| | ||| ||||| |||| ||| |||||||| ||||| ||||||||    
T  26750984 ccttcggttggtaatcggagtcaacaagtatgttttgcggttttatatcgcaatgcaaaatccactccaaacattcttcgtgtaaata 26751071  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 26736948 - 26737138
Alignment:
Q  19 cattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatcagcaa 118  Q
    |||||||||||||| ||||||| ||||||||  || ||||| ||    ||| ||||| | ||||  || |||||||| || || ||||||||||| ||||    
T  26736948 cattcaggtgccatgtaacctcgtgtccctcgaatccttgagaagtttgaattatcatgctcattcctgttcaatagcttagacaaaccaaaatctgcaa 26737047  T
Q  119 cctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagc 209  Q
    |||| ||| || |||  | |||||  |  || ||||| || || | ||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  26737048 ccttaggtcgataatcagagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttcatgtaaataagc 26737138  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 26713712 - 26713902
Alignment:
Q  19 cattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatcagcaa 118  Q
    |||||||||||||| ||||||| ||||||||  || ||||| ||    ||| ||||| | ||||  || |||||||| || || ||||||||||| ||||    
T  26713712 cattcaggtgccatgtaacctcgtgtccctcgaatccttgagaagtttgaattatcatgctcattccttttcaatagcttagacaaaccaaaatctgcaa 26713811  T
Q  119 cctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagc 209  Q
    |||| ||| || |||    |||||  |  || ||||| || || | ||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  26713812 ccttaggtcgataatcatagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttcatgtaaataagc 26713902  T

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Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 185 - 326
Target Start/End: Original strand, 6609317 - 6609458
Alignment:
Q  185 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 284  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6609317 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6609416  T
Q  285 taaagaaccatgttctatatactcatagaccaaaagcctatg 326  Q
    ||| ||||||||||| ||||||||||| |||| |||||||||    
T  6609417 taatgaaccatgttccatatactcataaaccagaagcctatg 6609458  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 185 - 326
Target Start/End: Complemental strand, 6624804 - 6624663
Alignment:
Q  185 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 284  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6624804 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6624705  T
Q  285 taaagaaccatgttctatatactcatagaccaaaagcctatg 326  Q
    ||| |||||||||||  |||||||||| |||| |||||||||    
T  6624704 taatgaaccatgttccgtatactcataaaccagaagcctatg 6624663  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 21130440 - 21130554
Alignment:
Q  148 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 247  Q
    ||||||||||| || | ||||||||| |||| |||||||||||| |||||||||| ||| || ||| || |||||||||| | ||| | || | |||| |    
T  21130440 atattttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagatatgctaaaactctagctgttcctaaagcaatatcataccttt 21130539  T
Q  248 tattccaatcaagtg 262  Q
    || ||||||||||||    
T  21130540 tagtccaatcaagtg 21130554  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 18658605 - 18658681
Alignment:
Q  151 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttcc 227  Q
    |||||||| || | ||||||||| |||| |||||||||||| |||||||||| |||||| | | |||||||||||||    
T  18658605 ttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcc 18658681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 29213017 - 29213084
Alignment:
Q  151 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 218  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||  | |||||||||||||||    
T  29213017 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcataaatataagccaaaccttt 29213084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 21098766 - 21098712
Alignment:
Q  148 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgta 202  Q
    |||||||| || || | |||||||||||||| |||||||||||| ||||||||||    
T  21098766 atattttgcggctttatatcacaatgtaaaatccattccaaacattcttcatgta 21098712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 21123312 - 21123426
Alignment:
Q  148 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 247  Q
    ||||||||||| || | ||||||||| |||| ||| |||| ||| |||||||||| |||||| | | || |||||||||| | ||| | || | |||| |    
T  21123312 atattttgaggctttatatcacaatgcaaaatccactccatacattcttcatgtagataagcaagaactctagctgttcctaaagcaatatcataccttt 21123411  T
Q  248 tattccaatcaagtg 262  Q
    || ||||||||||||    
T  21123412 tactccaatcaagtg 21123426  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 39132296 - 39132235
Alignment:
Q  148 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagc 209  Q
    ||||||||||| || | |||||||||||||| ||| |||||||| |||||||||| ||||||    
T  39132296 atattttgaggctttatatcacaatgtaaaatccactccaaacattcttcatgtagataagc 39132235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 11791111 - 11791148
Alignment:
Q  165 atcacaatgtaaaacccattccaaacactcttcatgta 202  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  11791111 atcacaatgcaaaacccattccaaacactcctcatgta 11791148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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