View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_4 (Length: 706)
Name: NF15401_low_4
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 28910729 - 28910432
Alignment:
| Q |
16 |
atattcacaacaggcaataatgtcatactcgagtttttacctcaatttattttacgtagcaaaaatttattcatgaacttgactcgtaaaatcaaacgag |
115 |
Q |
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| T |
28910729 |
atattcacaataggcaataatgtcatactcgagtttttacctcaatttattttacctagctaaaatttattcatgaacttgactcgtaaaatcaaacgag |
28910630 |
T |
|
| Q |
116 |
tttaagtaaaattgaaattatataaaattgttatacacatgatttatatatacaatataatgttgtaaataggtaagtgggatataattataatgttgaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28910629 |
tttaagtaaaattgaaattatataaaattgttatacacatgatttatatatacaatataatgttgtaaataggtaagtgggatataattctaatgttgaa |
28910530 |
T |
|
| Q |
216 |
ataaacagggaagtacgatataattcaaaagattaacctaattataaaatcaaaatatacataatcactaaaataaattgtcatgctcaaccttgtat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28910529 |
ataaacagggaagtacgatataattcaaaagattaacctaattataaaatcaaaatatacataatcactaaaataaattgtcatgcttaaccttgtat |
28910432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 469 - 689
Target Start/End: Complemental strand, 28910279 - 28910059
Alignment:
| Q |
469 |
ataagtttatcctattacaccgattttaatgcgagtcaaatccagtgtaaacttcaatttcacaaaaaacgagtctactccaagttgacattaaattcac |
568 |
Q |
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| T |
28910279 |
ataagtttatcctattacaccgattttaatgcgagtcaaatccagtgtaaacttcgatttcacaaaaaacgagtctactccaggttgacactaaattcac |
28910180 |
T |
|
| Q |
569 |
tttaaaacgtaaatttggtgaatttacaagttaaaattagagcttgagaacaagctattaagattaataaaattaccatatgtatttaaacaacaaaata |
668 |
Q |
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| T |
28910179 |
tttaaaacataaatttggtgaatttacaagttaaaactagagcttgagaacaagctattaagattaataaaattaccatatgtatttaaacaacaaaata |
28910080 |
T |
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| Q |
669 |
cagactccaaatgtggtcact |
689 |
Q |
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| T |
28910079 |
cagactccaaatgtggtcact |
28910059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 41081446 - 41081367
Alignment:
| Q |
235 |
ataattcaaaagattaacctaattataaaatcaaaatata-cataatcactaaaataaattgtcatgctcaaccttgtat |
313 |
Q |
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| T |
41081446 |
ataattcaaaatcttaacttaattataaagtcaaaatataccataatcaccaaaataaagcttcatgctcaatcttgtat |
41081367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 34023066 - 34023143
Alignment:
| Q |
235 |
ataattcaaaagattaacctaattataaaatcaaaatatacataatcactaaaataaattgtcatgctcaaccttgtat |
313 |
Q |
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| T |
34023066 |
ataattcaaaatattatcttaattataaaaccaaaatatatctaatcgctaaaat-aagtgtaatgttcaaccttgtat |
34023143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 50624774 - 50624708
Alignment:
| Q |
238 |
attcaaaagattaacctaattataaaatcaaaatatacataatcactaaaataaattgtcatgctca |
304 |
Q |
| |
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|||| ||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
50624774 |
attcgaaatattaacgtaattataaaatcaaaatatatcaaatcaccgtaataaattgtcatgctca |
50624708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 2160484 - 2160416
Alignment:
| Q |
237 |
aattcaaaagattaacctaattataaaatcaaaatatacataatcactaaaataaattgtcatgctcaa |
305 |
Q |
| |
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||||||||||||||| || ||||||| ||||||||||| |||||| ||||||||| ||||||||| |
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| T |
2160484 |
aattcaaaagattaatttatttataaagtcaaaatatacttaatcatccgaataaattggcatgctcaa |
2160416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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