View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_41 (Length: 295)
Name: NF15401_low_41
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 42460562 - 42460827
Alignment:
| Q |
14 |
atgaaaataagccgttgcatttccctccacacgttctcattgccttatctccaagctactactcttcannnnnnnnnnnnnnnnnnaacactccaaatta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42460562 |
atgaaaataagccgttgcatttccctccacacgttctcattgccttatctccaagctactactcttcatttttttccattttttttaacactccaaatta |
42460661 |
T |
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| Q |
114 |
aacaaaaccactactctcaaattttctcagttacactgccaccattcatcatgttcactgctaccaaagtagccttcactttagcaccccctcgtccatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42460662 |
aacaaaaccactactctcaaattttctcagttacactgccaccattcatcatgttcactgctaccaaagtagccttcactttagcaccccctcgtccatg |
42460761 |
T |
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| Q |
214 |
ttctgcacccccaacacccttcattccattctctttttcttctgtttctcctcgtcaccttaattc |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42460762 |
ttctgcacccccaacacccttcattccattctctttttcttctgtttctcctcctcaccttaattc |
42460827 |
T |
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