View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15401_low_42 (Length: 289)

Name: NF15401_low_42
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15401_low_42
NF15401_low_42
[»] chr7 (3 HSPs)
chr7 (193-289)||(33991833-33991929)
chr7 (80-130)||(33991719-33991769)
chr7 (194-247)||(27567774-27567827)
[»] scaffold0233 (1 HSPs)
scaffold0233 (193-247)||(17031-17085)
[»] chr8 (6 HSPs)
chr8 (195-247)||(26938712-26938764)
chr8 (195-247)||(26938971-26939023)
chr8 (193-247)||(24916145-24916199)
chr8 (193-241)||(16483969-16484017)
chr8 (193-247)||(12133429-12133483)
chr8 (201-241)||(33695136-33695176)
[»] chr5 (3 HSPs)
chr5 (193-249)||(14820521-14820577)
chr5 (193-247)||(26724117-26724171)
chr5 (193-249)||(19343558-19343614)
[»] chr4 (2 HSPs)
chr4 (193-247)||(40390896-40390950)
chr4 (194-230)||(43914050-43914086)
[»] chr3 (7 HSPs)
chr3 (193-247)||(20336787-20336841)
chr3 (196-245)||(52423017-52423066)
chr3 (195-247)||(20314896-20314948)
chr3 (193-247)||(34359337-34359391)
chr3 (193-247)||(44446960-44447014)
chr3 (194-247)||(50334743-50334796)
chr3 (193-241)||(52423196-52423244)
[»] scaffold0478 (1 HSPs)
scaffold0478 (193-247)||(3228-3282)
[»] scaffold0020 (1 HSPs)
scaffold0020 (193-247)||(152278-152332)
[»] chr6 (1 HSPs)
chr6 (193-235)||(25042953-25042995)
[»] chr2 (1 HSPs)
chr2 (193-247)||(29242669-29242723)
[»] chr1 (1 HSPs)
chr1 (193-241)||(37471046-37471094)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 193 - 289
Target Start/End: Original strand, 33991833 - 33991929
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagttttagttttctctattattgtagtttttaagaatggtccatatttt 289  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33991833 gtttttaatccctataaaatcatgagttttcaagtttaattcttataaagttttagttttctctattattgtagtttttaagaatggtctatatttt 33991929  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 33991719 - 33991769
Alignment:
Q  80 ctcaattgcaattaaatttcataccttaatcatgttcataccttaattatg 130  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33991719 ctcaattgcaattaaatttcatgccttaatcatgttcataccttaattatg 33991769  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 27567827 - 27567774
Alignment:
Q  194 tttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    ||||||||||||| ||||||||||||||| ||||||| ||| |||||| |||||    
T  27567827 tttttagtccctacaaaatcatgagttttaaagtttattccctataaaatttta 27567774  T

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Target: scaffold0233 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 17085 - 17031
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    |||||||||||||||||||||| ||||||||| ||||||||| |||||| |||||    
T  17085 gtttttagtccctataaaatcacgagttttcaggtttaatccctataaaatttta 17031  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 26938764 - 26938712
Alignment:
Q  195 ttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    ||||||||||||||||||||| |||||||||||||| ||| |||||| |||||    
T  26938764 ttttagtccctataaaatcataagttttcaagtttagtccctataaaatttta 26938712  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 26939023 - 26938971
Alignment:
Q  195 ttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    ||||||||||||||||||||| |||||||||||||| ||| |||||| |||||    
T  26939023 ttttagtccctataaaatcataagttttcaagtttagtccctataaaatttta 26938971  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 24916199 - 24916145
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    ||||||||||| |||||||||||||||||| ||||||| ||| |||||| |||||    
T  24916199 gtttttagtccatataaaatcatgagtttttaagtttagtccctataaaatttta 24916145  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 16484017 - 16483969
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaa 241  Q
    |||||||||||||||||||| |  |||||||||||||| ||||||||||    
T  16484017 gtttttagtccctataaaattacaagttttcaagtttagtccttataaa 16483969  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 12133429 - 12133483
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    |||||||||| ||| |||||||||||||||||| ||||||  ||||||| |||||    
T  12133429 gtttttagtctctacaaaatcatgagttttcaaatttaatgtttataaaatttta 12133483  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 33695136 - 33695176
Alignment:
Q  201 tccctataaaatcatgagttttcaagtttaatccttataaa 241  Q
    |||||||||||| ||||||||||||||||| || |||||||    
T  33695136 tccctataaaattatgagttttcaagtttagtctttataaa 33695176  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 14820577 - 14820521
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagttttagt 249  Q
    ||||||||| ||||||||||||| |||||||||||||| |||||| ||| |||||||    
T  14820577 gtttttagttcctataaaatcataagttttcaagtttagtccttacaaaattttagt 14820521  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 26724117 - 26724171
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    |||||||||||||| ||||||| |||||||| |||||| ||| |||||| |||||    
T  26724117 gtttttagtccctacaaaatcacgagttttcgagtttagtccctataaaatttta 26724171  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 19343558 - 19343614
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagttttagt 249  Q
    ||||||||| |||| ||||||||||||||| ||||||| ||  |||||| |||||||    
T  19343558 gtttttagtacctacaaaatcatgagtttttaagtttagtctctataaaattttagt 19343614  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 40390896 - 40390950
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    |||||||||||||| ||||||||||||||||||||||| | | |||||| |||||    
T  40390896 gtttttagtccctacaaaatcatgagttttcaagtttagttcctataaaatttta 40390950  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 43914050 - 43914086
Alignment:
Q  194 tttttagtccctataaaatcatgagttttcaagttta 230  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  43914050 tttttagtccctataaaatcacgagtttttaagttta 43914086  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 20336787 - 20336841
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    |||||||||||||| ||||||| |||||||||| |||| |||||||||| |||||    
T  20336787 gtttttagtccctacaaaatcaagagttttcaactttagtccttataaaatttta 20336841  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 52423017 - 52423066
Alignment:
Q  196 tttagtccctataaaatcatgagttttcaagtttaatccttataaagttt 245  Q
    ||||||||||| ||||||| ||||||||||||||| ||| ||||||||||    
T  52423017 tttagtccctacaaaatcacgagttttcaagtttagtccctataaagttt 52423066  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 20314896 - 20314948
Alignment:
Q  195 ttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    |||||||||||| ||||||| |||||||||| |||| |||||||||| |||||    
T  20314896 ttttagtccctacaaaatcaagagttttcaactttagtccttataaaatttta 20314948  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 34359337 - 34359391
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    ||||||||||| || ||||||||||||||| ||||||| ||| |||||| |||||    
T  34359337 gtttttagtccttacaaaatcatgagtttttaagtttagtccatataaaatttta 34359391  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 44447014 - 44446960
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    |||||||||||||||| ||| ||||||||| |||||||||||  ||||| |||||    
T  44447014 gtttttagtccctatataattatgagtttttaagtttaatcccaataaaatttta 44446960  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 50334796 - 50334743
Alignment:
Q  194 tttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    ||||||||| |||||||||||||||||||  | |||||||| |||||| |||||    
T  50334796 tttttagtctctataaaatcatgagttttttactttaatccctataaaatttta 50334743  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 52423244 - 52423196
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaa 241  Q
    |||||||||||||| ||||| || |||||||| ||||||||| ||||||    
T  52423244 gtttttagtccctacaaaattataagttttcatgtttaatccctataaa 52423196  T

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Target: scaffold0478 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 3228 - 3282
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    |||||||||||||| ||||||||||||||| ||| ||||||| ||| || |||||    
T  3228 gtttttagtccctacaaaatcatgagtttttaagcttaatccctatgaaatttta 3282  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 152332 - 152278
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    |||| ||||||||||||||| |||| |||||||||||| || ||||||| |||||    
T  152332 gtttgtagtccctataaaattatgaattttcaagtttagtctttataaaatttta 152278  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 25042995 - 25042953
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatcct 235  Q
    |||||||||||||| |||||||||||||||||| |||| ||||    
T  25042995 gtttttagtccctacaaaatcatgagttttcaaatttagtcct 25042953  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 29242723 - 29242669
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaagtttta 247  Q
    |||||||||||||| ||||| | ||||||||||||||| ||| |||||| |||||    
T  29242723 gtttttagtccctacaaaattaggagttttcaagtttagtccctataaaatttta 29242669  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 37471094 - 37471046
Alignment:
Q  193 gtttttagtccctataaaatcatgagttttcaagtttaatccttataaa 241  Q
    ||||||||||||||  |||||| ||||||||||||||| ||| ||||||    
T  37471094 gtttttagtccctaccaaatcaagagttttcaagtttagtccctataaa 37471046  T

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