View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15401_low_48 (Length: 266)
Name: NF15401_low_48
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_48 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr6 (4 HSPs) |
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| [»] chr2 (2 HSPs) |
| |
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| [»] scaffold0015 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 44093571 - 44093836
Alignment:
| Q |
1 |
tgaaggcgcttccccttcacctaggcttatccgctggaacaataacaactgtcagtgcactattttgaatgttgatggcagatgtctcggtgttctcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44093571 |
tgaaggcgcttccccttcacctaggttgatccgctggaataataccaactgtcagtgcactattttgaatgttgatggcagatgtctcggtgttctcatt |
44093670 |
T |
|
| Q |
101 |
cgcgcaggttttggaggtgtctttcgcgacaacacagaaacatacatagcaggttattcgggctacatcagtcattctaaggacattctgtttgcagagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44093671 |
cgcgcaggttttggaggtgtctttcgcgacaacacaggaacatacatagcaggttattcgggctacatcagtcattctcaggacattctgtttgcagagc |
44093770 |
T |
|
| Q |
201 |
tcacagctctttatcaagggttaaggttggcggtcagcttaaattgtgagaaattggcgtgctatt |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
44093771 |
tcacagctctttatcaagggttaaggttggcggtcagcttaaattgttaggaattggcgtgctatt |
44093836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 4744974 - 4745239
Alignment:
| Q |
1 |
tgaaggcgcttccccttcacctaggcttatccgctggaacaataacaactgtcagtgcactattttgaatgttgatggcagatgtctcggtgttctcatt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |||| |
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|
| T |
4744974 |
tgaaggcgctgccccttcacctaggctgatccgttggaacaataacaactgtcgatgcactattttaaatgttgatggcagctgtctcggtgttcccatt |
4745073 |
T |
|
| Q |
101 |
cgcgcaggttttggaggtgtctttcgcgacaacacagaaacatacatagcaggttattcgggctacatcagtcattctaaggacattctgtttgcagagc |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4745074 |
cgcgcagggtttggaggtgtctttcgcgacaacacaggaacatacatagcaggctattcgggctacatcagtcattctcaggacattctgtttgcagagc |
4745173 |
T |
|
| Q |
201 |
tcacagctctttatcaagggttaaggttggcggtcagcttaaattgtgagaaattggcgtgctatt |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
4745174 |
tcacagctctttatcaagggttaaggttggcagtcaacttaaattgtgaggaattgacgtgctatt |
4745239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 45516896 - 45516645
Alignment:
| Q |
15 |
cttcacctaggcttatccgctggaacaataacaactgtcagtgcactattttgaatgttgatggcagatgtctcggtgttctcattcgcgcaggttttgg |
114 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||| |
|
|
| T |
45516896 |
cttcacctaggctgattcgctggaacaataacaactgtcagtgcactattttgaatgttgatggcagctgtctcgatgtttccattcacgcaggttttgg |
45516797 |
T |
|
| Q |
115 |
aggtgtctttcgcgacaacacagaaacatacatagcaggttattcgggctacatcagtcattctaaggacattctgtttgcagagctcacagctctttat |
214 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| || |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
45516796 |
aggtgtctttcgtgacaacacaggaacatacgtaacaggttattcaggctacatcagtcattcacaggacattctgtttgcagagctcacaactctttat |
45516697 |
T |
|
| Q |
215 |
caagggttaaggttggcggtcagcttaaattgtgagaaattggcgtgctatt |
266 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |
|
|
| T |
45516696 |
caagggttaaggttggcgatcagcttcaattgtgaggaattggcgtgctatt |
45516645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 16498717 - 16498452
Alignment:
| Q |
1 |
tgaaggcgcttccccttcacctaggcttatccgctggaacaataacaactgtcagtgcactattttgaatgttgatggcagatgtctcggtgttctcatt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
16498717 |
tgaaggcgctgccccttcacctaggctgatctgttggaacaataacaactgtcggtgcactattttgaatgttgatggcagctgtctcggtgttcccatt |
16498618 |
T |
|
| Q |
101 |
cgcgcaggttttggaggtgtctttcgcgacaacacagaaacatacatagcaggttattcgggctacatcagtcattctaaggacattctgtttgcagagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
16498617 |
cgcgcaggttttggaggtgtctttcgcgacaacacagaaacatacatagcaggttattcgggctacatcagtcattcttaggacattctgtttgtagagc |
16498518 |
T |
|
| Q |
201 |
tcacagctctttatcaagggttaaggttggcggtcagcttaaattgtgagaaattggcgtgctatt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |
|
|
| T |
16498517 |
tcacagctctttatcaagggttaaggttggcggttaacttaaattgtgaggaattggcgtgctatt |
16498452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 29805817 - 29806018
Alignment:
| Q |
32 |
cgctggaacaataacaactgtcagtgcactattttgaatgttgatggcagatgtctcggtgttctcattcgcgcaggttttggaggtgtctttcgcgaca |
131 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||||| |||||| ||||| || | ||| || ||||||| |||| ||||||| | |||||||| ||| |
|
|
| T |
29805817 |
cgctggaataataacaactttcattgcactattttgactgttgacggcagctgcaacagtgatcccattcgcacagggtttggagctatctttcgcaaca |
29805916 |
T |
|
| Q |
132 |
acaca-gaaacatacatagcaggttattcgggctacatcagtcattctaaggacattctgtttgcagagctcacagctctttatcaagggttaaggttgg |
230 |
Q |
| |
|
|| || | ||||||||||| ||||||||||| | |||||| || || | ||||| ||||||| ||||| |||||||| || || || |||| ||||| |
|
|
| T |
29805917 |
acgcagggcacatacatagcgggttattcgggttccatcagccacactcacgacatattgtttgcggagctgacagctctctaccatggtttaaagttgg |
29806016 |
T |
|
| Q |
231 |
cg |
232 |
Q |
| |
|
|| |
|
|
| T |
29806017 |
cg |
29806018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 28493407 - 28493609
Alignment:
| Q |
32 |
cgctggaacaataacaactgtcagtgcactattttgaa-tgttgatggcagatgtctcggtgttctcattcgcgcaggttttggaggtgtctttcgcgac |
130 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||||||| | |||||| ||||| || | ||| || ||||||| |||| ||||||| | |||||||| || |
|
|
| T |
28493407 |
cgctggaataataacaactttcattgcactattttgtactgttgacggcagctgcaacagtgatcccattcgcacagggtttggagctatctttcgcaac |
28493506 |
T |
|
| Q |
131 |
aacacagaa-acatacatagcaggttattcgggctacatcagtcattctaaggacattctgtttgcagagctcacagctctttatcaagggttaaggttg |
229 |
Q |
| |
|
||| ||| ||||||||||| ||||||||||| | |||||| || || | ||||| ||||||| ||||| |||||||| || || || |||| |||| |
|
|
| T |
28493507 |
aacgcagggcacatacatagcgggttattcgggttccatcagccacactcacgacatattgtttgcggagctgacagctctctaccatggtttaaagttg |
28493606 |
T |
|
| Q |
230 |
gcg |
232 |
Q |
| |
|
||| |
|
|
| T |
28493607 |
gcg |
28493609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 31932432 - 31932367
Alignment:
| Q |
62 |
attttgaatgttgatggcagatgtctcggtgttctcattcgcgcaggttttggaggtgtctttcgc |
127 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
31932432 |
attttgaatgttgatggcagctgtagcagtgttctggttcgtgcaggttttggaggtgtctttcgc |
31932367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 35296753 - 35297018
Alignment:
| Q |
1 |
tgaaggcgcttccccttcacctaggcttatccgctggaacaataacaactgtcagtgcactattttgaatgttgatggcagatgtctcggtgttctcatt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
35296753 |
tgaaggcgctgccccttcacctaggctgatccgttggaacaataacaactgtcggtgcactattttgaatgttgatggcagctgtctcggtgttcccatt |
35296852 |
T |
|
| Q |
101 |
cgcgcaggttttggaggtgtctttcgcgacaacacagaaacatacatagcaggttattcgggctacatcagtcattctaaggacattctgtttgcagagc |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
35296853 |
cgcgcagggtttggaggtgtctttcgcgacaacacaggaacatacatagcaggttattcgggctacatcagtcattctcaggacactctgtttgcagagc |
35296952 |
T |
|
| Q |
201 |
tcacagctctttatcaagggttaaggttggcggtcagcttaaattgtgagaaattggcgtgctatt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
35296953 |
tcacagctctttatcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctatt |
35297018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 14688280 - 14688545
Alignment:
| Q |
1 |
tgaaggcgcttccccttcacctaggcttatccgctggaacaataacaactgtcagtgcactattttgaatgttgatggcagatgtctcggtgttctcatt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
14688280 |
tgaaggcgctgccccttcacctaggctgatccgctggaacaataacaacagtcggtgcactattttgaatgttgatggcagctgtctcggtgttcccatt |
14688379 |
T |
|
| Q |
101 |
cgcgcaggttttggaggtgtctttcgcgacaacacagaaacatacatagcaggttattcgggctacatcagtcattctaaggacattctgtttgcagagc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
14688380 |
tgcgcaagttttggaggtgtctttcgcgacaacacaggaacatacatagcaggttattcgggctacatcagtcattctcaggatattctgtttgcagagc |
14688479 |
T |
|
| Q |
201 |
tcacagctctttatcaagggttaaggttggcggtcagcttaaattgtgagaaattggcgtgctatt |
266 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
14688480 |
tcacagctctttatcaaaggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctatt |
14688545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 13689 - 13954
Alignment:
| Q |
1 |
tgaaggcgcttccccttcacctaggcttatccgctggaacaataacaactgtcagtgcactattttgaatgttgatggcagatgtctcggtgttctcatt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| | ||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||||||| |||| |
|
|
| T |
13689 |
tgaaggcgctgccccttcacctaggctgatcagttggaacaataacaacagtcggtgcactattttaaatgttgatggcagctgtctcggtgttcccatt |
13788 |
T |
|
| Q |
101 |
cgcgcaggttttggaggtgtctttcgcgacaacacagaaacatacatagcaggttattcgggctacatcagtcattctaaggacattctgtttgcagagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
13789 |
cgcgcaggttttggaggtgtctttcgcgacaacacaggaacatacatagcaggttattcgggctacatcagtcattctcaggacaatctgtttgcagagc |
13888 |
T |
|
| Q |
201 |
tcacagctctttatcaagggttaaggttggcggtcagcttaaattgtgagaaattggcgtgctatt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
13889 |
tcacagctctttatcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctatt |
13954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 16768390 - 16768125
Alignment:
| Q |
1 |
tgaaggcgcttccccttcacctaggcttatccgctggaacaataacaactgtcagtgcactattttgaatgttgatggcagatgtctcggtgttctcatt |
100 |
Q |
| |
|
|||||||||| | ||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
16768390 |
tgaaggcgctgctccttcacctagtctgatccgttggaacaataacaactgtcggtgcactattttgaatgttgatggcagctgtctcggtgttcccatt |
16768291 |
T |
|
| Q |
101 |
cgcgcaggttttggaggtgtctttcgcgacaacacagaaacatacatagcaggttattcgggctacatcagtcattctaaggacattctgtttgcagagc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16768290 |
cgcgcagggtttggaggtgtctttcgcgacaacacatgaacatacatagcaggttatttgggctacatcagtcattctcaggacattctgtttgcagagc |
16768191 |
T |
|
| Q |
201 |
tcacagctctttatcaagggttaaggttggcggtcagcttaaattgtgagaaattggcgtgctatt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
16768190 |
tcacagctctttatcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctatt |
16768125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 49148197 - 49147932
Alignment:
| Q |
1 |
tgaaggcgcttccccttcacctaggcttatccgctggaacaataacaactgtcagtgcactattttgaatgttgatggcagatgtctcggtgttctcatt |
100 |
Q |
| |
|
|||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
49148197 |
tgaaggcgctgccccttcacctaggttgatccgctggaacaataacaactgtcagtgcactattttgaatgttgatggcaactgtctcggtgttccgatt |
49148098 |
T |
|
| Q |
101 |
cgcgcaggttttggaggtgtctttcgcgacaacacagaaacatacatagcaggttattcgggctacatcagtcattctaaggacattctgtttgcagagc |
200 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
49148097 |
cgcgcaggttttggaggtgcctttcgtgacaacacatgaacatacatagcaggttattcgggctacatcagtcattcttaggacattctatttgcagagc |
49147998 |
T |
|
| Q |
201 |
tcacagctctttatcaagggttaaggttggcggtcagcttaaattgtgagaaattggcgtgctatt |
266 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
49147997 |
tcacaactctttatcaagggttaaggttggcgatcagcttaaattgtgaggtattggcgtgctatt |
49147932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 13821071 - 13821319
Alignment:
| Q |
12 |
ccccttcacctaggcttatccgctggaacaataacaactgtcagtgcactattttgaatgttgatggcagatgtctcggtgttctcattcgcgcaggttt |
111 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||| |
|
|
| T |
13821071 |
ccccttcacctaggctgatctgctggaacaataacaactgtcagtgtactattttgaatgttgatggcagttgtctcgatgttcccattcgcacaggttt |
13821170 |
T |
|
| Q |
112 |
tggaggtgtctttcgcgacaacacagaaacatacatagcaggttattcgggctacatcagtcattctaaggacattctgtttgcagagctcacagctctt |
211 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
13821171 |
tggaggtgtctttcgtgacaacacaggaacatacatagcaggttattcgagctacatcagtcattctcagga------atttgcagagctcacagctctt |
13821264 |
T |
|
| Q |
212 |
tatcaagggttaaggttggcggtcagcttaaattgtgagaaattggcgtgctatt |
266 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
13821265 |
tatcaatggttaaggttggcgatcaacttaaattgtgaggaattgacgtgctatt |
13821319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 29259107 - 29259159
Alignment:
| Q |
214 |
tcaagggttaaggttggcggtcagcttaaattgtgagaaattggcgtgctatt |
266 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
29259107 |
tcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctatt |
29259159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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