View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_50 (Length: 258)
Name: NF15401_low_50
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 11013153 - 11012915
Alignment:
| Q |
1 |
ttattaaatgatataggtgtcactacgtgaaacttttatagaaacaataaaagt--tcataaggatttttaaaaaaggaaacatgacgactaatttttat |
98 |
Q |
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| T |
11013153 |
ttattaaatgatataggtgccactacgtgtaa-----acagaaacaataaaagtattcataaggatttttaaaaaaggaaacatgacgactaatttttat |
11013059 |
T |
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| Q |
99 |
acaaatatgacacaactaataattttttaaaacgtattcataagaatttttaaatcttctatcagaatcagactaatttctcagcaagtaaagttgcagt |
198 |
Q |
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| T |
11013058 |
acaaatatgacacaactaataattttttaaaacgtattcataagaatttttaaatcttctatcagaatcagactaatttctcagcaagtaaagttgcagt |
11012959 |
T |
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| Q |
199 |
ttaaaattcgtatccaacctcnnnnnnnttgtaaagatcaaact |
242 |
Q |
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| T |
11012958 |
ttaaaattcgtatccaacctcaaaaaaattgtaaagatcaaact |
11012915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 11002908 - 11002787
Alignment:
| Q |
69 |
aaaaaaggaaacatgacgactaatttttatacaaatatgacacaactaataattttttaaaacgtattcataagaatttttaaatcttctatcagaatca |
168 |
Q |
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||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||| |||||||||| |
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| T |
11002908 |
aaaaaaggaaatatgacgactaatatttatacaaatatgacgcaactaataattttttagaacgtattcataaggtttttaaaatcctctatcagaa--- |
11002812 |
T |
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| Q |
169 |
gactaatttctcagcaagtaaagttgca |
196 |
Q |
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||||||||||| ||||||||||||| |
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| T |
11002811 |
---taatttctcagtaagtaaagttgca |
11002787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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