View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_53 (Length: 252)
Name: NF15401_low_53
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 11972173 - 11972270
Alignment:
| Q |
10 |
aggagcacagattccagtatccattccaacaacttccaatttcttctttaaaatatcaaactggctctccacactattctcttccaaatgaactatcc |
107 |
Q |
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| T |
11972173 |
aggaacacagattccagtatccattccaacaacttccaatttcttctttaaaatatcaaactggctctccatactattctcttccaaatgaactatcc |
11972270 |
T |
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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 11972338 - 11972397
Alignment:
| Q |
175 |
gttattctgttctaaaaatcttacctggtctaggaaccttagcagttgaaacaccatgat |
234 |
Q |
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| T |
11972338 |
gttattctgttctaaaaatcttacctggtctaggaaccttagcagttgaaacaccatgat |
11972397 |
T |
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