View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15401_low_59 (Length: 244)

Name: NF15401_low_59
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15401_low_59
NF15401_low_59
[»] chr5 (3 HSPs)
chr5 (10-108)||(35475925-35476023)
chr5 (196-244)||(35475788-35475836)
chr5 (43-104)||(35474495-35474556)
[»] chr2 (4 HSPs)
chr2 (40-104)||(13453847-13453911)
chr2 (37-69)||(14482240-14482272)
chr2 (40-104)||(43820633-43820697)
chr2 (41-104)||(39801060-39801123)
[»] chr4 (2 HSPs)
chr4 (43-108)||(1015088-1015153)
chr4 (41-104)||(56215718-56215781)
[»] chr8 (1 HSPs)
chr8 (40-104)||(26629001-26629065)
[»] chr1 (1 HSPs)
chr1 (40-104)||(27804724-27804788)
[»] chr6 (1 HSPs)
chr6 (34-104)||(34019815-34019885)
[»] scaffold0086 (1 HSPs)
scaffold0086 (34-70)||(15721-15757)


Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 35476023 - 35475925
Alignment:
Q  10 aaaattaattatctctaatatcaatatgaagagtgatatttgtacaactaattttatacaannnnnnngacaaccactttttctctattcttattagac 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||       |||||||||||||||||||||||||||||||    
T  35476023 aaaattaaatatctctaatatcaatatgaagagtgatatttgtataactaattttatacaatttttttgacaaccactttttctctattcttattagac 35475925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 35475836 - 35475788
Alignment:
Q  196 attgtactaatatcaattctctatcgacatcatcacaaccattttgagt 244  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  35475836 attgtacgaatatcaattctctatcgacatcatcacaaccattgtgagt 35475788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 35474556 - 35474495
Alignment:
Q  43 tgatatttgtacaactaattttatacaannnnnnngacaaccactttttctctattcttatt 104  Q
    |||||||||||||| ||||||| |||||       ||||||||||||||||||||| |||||    
T  35474556 tgatatttgtacaattaattttgtacaatttttgtgacaaccactttttctctatttttatt 35474495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 13453847 - 13453911
Alignment:
Q  40 gagtgatatttgtacaactaattttatacaannnnnnngacaaccactttttctctattcttatt 104  Q
    |||||||||||||||||| ||||||||||||       |||||||||||||||||| ||||||||    
T  13453847 gagtgatatttgtacaaccaattttatacaatttttgtgacaaccactttttctctcttcttatt 13453911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 14482272 - 14482240
Alignment:
Q  37 gaagagtgatatttgtacaactaattttataca 69  Q
    |||||||||||||||||||||||||||||||||    
T  14482272 gaagagtgatatttgtacaactaattttataca 14482240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 43820633 - 43820697
Alignment:
Q  40 gagtgatatttgtacaactaattttatacaannnnnnngacaaccactttttctctattcttatt 104  Q
    |||||||||||||||||| ||||||||| ||       |||||||||||||||| ||||||||||    
T  43820633 gagtgatatttgtacaaccaattttatataatctttgtgacaaccactttttctttattcttatt 43820697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 39801060 - 39801123
Alignment:
Q  41 agtgatatttgtacaactaattttatacaannnnnnngacaaccactttttctctattcttatt 104  Q
    ||||||||||||||||| |||||| |||||       ||||| |||||||||||||||||||||    
T  39801060 agtgatatttgtacaaccaattttgtacaacctttgtgacaatcactttttctctattcttatt 39801123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 1015153 - 1015088
Alignment:
Q  43 tgatatttgtacaactaattttatacaannnnnnngacaaccactttttctctattcttattagac 108  Q
    ||||||||||||||| |||||| |||||       | |||||||||||||||||||||||||||||    
T  1015153 tgatatttgtacaaccaattttgtacaacctttgtggcaaccactttttctctattcttattagac 1015088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 56215781 - 56215718
Alignment:
Q  41 agtgatatttgtacaactaattttatacaannnnnnngacaaccactttttctctattcttatt 104  Q
    ||||||||||||||||  |||||| |||||       |||||||||||||||||||||||||||    
T  56215781 agtgatatttgtacaatcaattttgtacaacctttctgacaaccactttttctctattcttatt 56215718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 26629001 - 26629065
Alignment:
Q  40 gagtgatatttgtacaactaattttatacaannnnnnngacaaccactttttctctattcttatt 104  Q
    |||||||||||||||||| |||||| |||||       |||||||||||||||| ||||||||||    
T  26629001 gagtgatatttgtacaaccaattttgtacaacatttgtgacaaccactttttctttattcttatt 26629065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 27804724 - 27804788
Alignment:
Q  40 gagtgatatttgtacaactaattttatacaannnnnnngacaaccactttttctctattcttatt 104  Q
    |||||||||||||||||| ||||||| ||||       ||||||||||||||||||||| |||||    
T  27804724 gagtgatatttgtacaaccaattttacacaatctttgtgacaaccactttttctctatttttatt 27804788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 34019815 - 34019885
Alignment:
Q  34 tatgaagagtgatatttgtacaactaattttatacaannnnnnngacaaccactttttctctattcttatt 104  Q
    ||||| || |||||||||||||||||||||| |||||       || ||||||||||||||| ||||||||    
T  34019815 tatgatgactgatatttgtacaactaattttgtacaacctttgtgataaccactttttctctcttcttatt 34019885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 15721 - 15757
Alignment:
Q  34 tatgaagagtgatatttgtacaactaattttatacaa 70  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  15721 tatgaggagtgatatttgtacaaccaattttatacaa 15757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University