View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15401_low_6 (Length: 683)

Name: NF15401_low_6
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15401_low_6
NF15401_low_6
[»] chr1 (3 HSPs)
chr1 (1-667)||(7644321-7644986)
chr1 (176-250)||(7351904-7351979)
chr1 (363-439)||(11801376-11801451)
[»] chr8 (2 HSPs)
chr8 (26-256)||(26568336-26568565)
chr8 (280-443)||(26568569-26568726)
[»] chr4 (5 HSPs)
chr4 (29-164)||(24556875-24557009)
chr4 (159-233)||(28313616-28313690)
chr4 (184-253)||(23998964-23999033)
chr4 (363-439)||(24557063-24557138)
chr4 (388-439)||(24826668-24826718)
[»] chr7 (2 HSPs)
chr7 (385-439)||(23792799-23792852)
chr7 (363-421)||(18573722-18573780)
[»] chr5 (1 HSPs)
chr5 (174-254)||(22876454-22876534)
[»] chr2 (6 HSPs)
chr2 (388-439)||(13968980-13969030)
chr2 (169-228)||(25056840-25056899)
chr2 (388-441)||(37349816-37349868)
chr2 (176-212)||(5169282-5169318)
chr2 (176-212)||(45107971-45108007)
chr2 (176-212)||(45109690-45109726)
[»] chr6 (2 HSPs)
chr6 (177-254)||(24633788-24633865)
chr6 (387-439)||(34220017-34220068)
[»] chr3 (2 HSPs)
chr3 (388-441)||(17472049-17472101)
chr3 (385-441)||(23459299-23459354)


Alignment Details
Target: chr1 (Bit Score: 620; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 1 - 667
Target Start/End: Original strand, 7644321 - 7644986
Alignment:
Q  1 aagctcaccacaaagtaagttgtgcagataaacttatggtcccaactcaagaatatgcatgctttgattttgcatgtcttgtacaaacgatcaccgtctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||    
T  7644321 aagctcaccacaaagtaagttgtgcagataaacttatggtcccaactcaagaatatgcatgctctgatttcgcatgtcttgtacaaacgatcactgtctt 7644420  T
Q  101 tgaaaagcgtgtcttaactttacacgttctatactgatgagttgcagcctagatcaagcgcgaccattctcgtaccagacaaccaatgcgaggctctgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7644421 tgaaaagcgtgtcttaactttacacgttctatactgatgagttgcagcctagatcaagcgcgaccattctcgtaccagacaaccaatgcgaggctctgga 7644520  T
Q  201 tcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaatccatgactatatcaacaaatccaggactataaaa-ggggcacttagg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7644521 tcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaatccatgactatatcaacaaatccaggactataaaagggggcacttagg 7644620  T
Q  300 aggcaccaaagaaggaatagataatcttgaacgatgtattttcatctatatcttatttggacttgctcttaaaattctacctcaaacatttcattgaaca 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7644621 aggcaccaaagaaggaatagataatcttgaacgatgtattttcatctataccttatttggac-tgctcttaaaattctacctcaaacatttcattgaaca 7644719  T
Q  400 actcacatgttgtaattaacttgtgtattacatacgtgaatataataatatagtcgttcatttttaatttgtcttttttgagtaataatgatagggagga 499  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7644720 actcacatgttgtaattaacttgtgt-ttacatacgtgaatataataatatagtcgttcatttttaatttgtcttttttgagtaataatgatagggagga 7644818  T
Q  500 ttggtccaccaacgatttaaatcatacgaaaatattttgaatttagtcttaacctaccaccaaacttgaactttcacattatcgagcaatcacgatacta 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7644819 ttggtccaccaacgatttaaatcatacgaaaatattttgaatttagtcttaacctaccaccaaacttgaactttcatattatcgagcaatcacgatacta 7644918  T
Q  600 aaaaagcatgaaaccgcaaaatgttgctggataagcaatcacgtttgttgttggataggatatctctg 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7644919 aaaaagcatgaaaccgcaaaatgttgctggataagcaatcacgtttgttgttgaataggatatctctg 7644986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 7351979 - 7351904
Alignment:
Q  176 cagacaaccaatgcgaggctctggatcacaaattaatagg-tatgagtgaccaaagaaatgctcattaaatcaaca 250  Q
    ||||||||||||| ||||||||||||||||| ||||| || | ||| ||| |||||||| || ||||||| |||||    
T  7351979 cagacaaccaatgggaggctctggatcacaacttaatgggctttgaatgatcaaagaaaggcccattaaaccaaca 7351904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 363 - 439
Target Start/End: Original strand, 11801376 - 11801451
Alignment:
Q  363 tgctcttaaaattctacctcaaacatttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaa 439  Q
    ||||||| |||||| |||| | |||||||| |||||  ||||| |||| |||||||||||||| | |||||||||||    
T  11801376 tgctcttgaaattccacctaagacatttcactgaaccgctcacctgttataattaacttgtgt-tcacatacgtgaa 11801451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 5e-58; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 26 - 256
Target Start/End: Original strand, 26568336 - 26568565
Alignment:
Q  26 agataaacttatggtcccaactcaagaatatgcatgctttgattttgcatgtcttgtacaaacgatcaccgtctttgaaaagcgtgtcttaactttacac 125  Q
    |||||||||| |||||| | ||||| |||||||||||||||||||  ||||||||||||||||||||| ||||||||||| ||| |||||||||| |||     
T  26568336 agataaacttgtggtcctagctcaataatatgcatgctttgatttcacatgtcttgtacaaacgatcaacgtctttgaaa-gcgcgtcttaacttcacat 26568434  T
Q  126 gttctatactgatgagttgcagcctagatcaagcgcgaccattctcgtaccagacaaccaatgcgaggctctggatcacaaattaataggtatgagtgac 225  Q
    ||||| ||  || |||||||||||||||||| |||| |||   |||  ||||||||||||||| |||||| |||||||||||||||| ||| ||||||||    
T  26568435 gttctgtatggacgagttgcagcctagatcacgcgcaaccgcactcaaaccagacaaccaatgggaggctttggatcacaaattaatgggtctgagtgac 26568534  T
Q  226 caaagaaatgctcattaaatcaacaaatcca 256  Q
    ||||||||||| |||||| ||||||||||||    
T  26568535 caaagaaatgcccattaagtcaacaaatcca 26568565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 443
Target Start/End: Original strand, 26568569 - 26568726
Alignment:
Q  280 ctataaaaggggcacttaggaggcaccaaagaaggaatagataatcttgaacgatgtattttcatctatatcttatttggacttgctcttaaaattctac 379  Q
    |||||||||||||||||||||||||||      || || ||| || |||||   ||||||||||||||  |||||||| || | ||||||| |||||  |    
T  26568569 ctataaaaggggcacttaggaggcacctc----gggatggatgattttgaatagtgtattttcatctaagtcttatttagagt-gctcttagaattcctc 26568663  T
Q  380 ctcaaacatttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaatata 443  Q
    ||  ||||||||| | |||| ||||  ||||||||||||||||||| |||||||| ||||||||    
T  26568664 ctagaacatttcactcaacagctcatctgttgtaattaacttgtgt-ttacatacatgaatata 26568726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 24556875 - 24557009
Alignment:
Q  29 taaacttatggtcccaactcaagaatatgcatgctttgattttgcatgtcttgtacaaacgatcaccgtctttgaaaagcgtgtcttaactttacacgtt 128  Q
    ||||||| |||||||| |||||||||||||||||| ||||| | ||||||||| ||||||||||| ||||||| ||||||  |||||||||| || ||||    
T  24556875 taaacttgtggtcccagctcaagaatatgcatgctctgattctacatgtcttgcacaaacgatcaacgtcttt-aaaagcacgtcttaacttcacgcgtt 24556973  T
Q  129 ctatactgatgagttgcagcctagatcaagcgcgac 164  Q
    |  ||| || |||||||||| ||||||| |||||||    
T  24556974 ccgtacggacgagttgcagcttagatcacgcgcgac 24557009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 28313616 - 28313690
Alignment:
Q  159 cgcgaccattctcgtaccagacaaccaatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaa 233  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| |||  |||| ||  ||||| ||||||||||    
T  28313616 cgcgaccatactcgaaccagacaaccaatgcgaggctctggatcgcaacataatgggcttgagtaaccaaagaaa 28313690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 23998964 - 23999033
Alignment:
Q  184 caatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaat 253  Q
    ||||| ||||||||||||||||| ||||| ||  || ||||||||||||| || ||||||||||||||||    
T  23998964 caatgggaggctctggatcacaacttaatgggcttgggtgaccaaagaaaggcccattaaatcaacaaat 23999033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 363 - 439
Target Start/End: Original strand, 24557063 - 24557138
Alignment:
Q  363 tgctcttaaaattctacctcaaacatttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaa 439  Q
    |||||||||||||| |||| ||||||| || | ||||||| || | ||||||||||||| ||| |||||||||||||    
T  24557063 tgctcttaaaattccacctaaaacattccactaaacaacttaccttttgtaattaacttatgt-ttacatacgtgaa 24557138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 439
Target Start/End: Original strand, 24826668 - 24826718
Alignment:
Q  388 tttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaa 439  Q
    ||||||||| || ||||| ||||||||||||||||||| |||||||||||||    
T  24826668 tttcattgagcagctcacctgttgtaattaacttgtgt-ttacatacgtgaa 24826718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 23792799 - 23792852
Alignment:
Q  385 acatttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaa 439  Q
    |||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||    
T  23792799 acatttcactgagcaactcacatgttgtaattatcttgtgt-ttacatacgtgaa 23792852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 18573722 - 18573780
Alignment:
Q  363 tgctcttaaaattctacctcaaacatttcattgaacaactcacatgttgtaattaactt 421  Q
    |||||||  |||||||||| | |||||||||||| |||||||| | |||||||||||||    
T  18573722 tgctcttggaattctacctaagacatttcattgagcaactcaccttttgtaattaactt 18573780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 22876454 - 22876534
Alignment:
Q  174 accagacaaccaatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaatc 254  Q
    |||||| |||||| | |||||||||| | |||| || || ||  |||||||||||||||| || |||||||||||||||||    
T  22876454 accagagaaccaacgggaggctctggttgacaactttatgggcttgagtgaccaaagaaaggcccattaaatcaacaaatc 22876534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 439
Target Start/End: Original strand, 13968980 - 13969030
Alignment:
Q  388 tttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaa 439  Q
    ||||||||| || ||||| ||||||||||||||||||| |||||||||||||    
T  13968980 tttcattgagcagctcacttgttgtaattaacttgtgt-ttacatacgtgaa 13969030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 25056899 - 25056840
Alignment:
Q  169 ctcgtaccagacaaccaatgcgaggctctggatcacaaattaataggtatgagtgaccaa 228  Q
    |||||||||||||||| ||| |||||||| |||||||| ||||| ||  |||||||||||    
T  25056899 ctcgtaccagacaacctatgagaggctcttgatcacaacttaatggggttgagtgaccaa 25056840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 441
Target Start/End: Original strand, 37349816 - 37349868
Alignment:
Q  388 tttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaata 441  Q
    ||||| ||| || ||||| ||||||||||||||||||| |||||||||||||||    
T  37349816 tttcactgagcagctcacctgttgtaattaacttgtgt-ttacatacgtgaata 37349868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 5169282 - 5169318
Alignment:
Q  176 cagacaaccaatgcgaggctctggatcacaaattaat 212  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  5169282 cagacaaccaatgggaggctctggatcacaacttaat 5169318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 45108007 - 45107971
Alignment:
Q  176 cagacaaccaatgcgaggctctggatcacaaattaat 212  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  45108007 cagacaaccaatgggaggctctggatcacaacttaat 45107971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 45109726 - 45109690
Alignment:
Q  176 cagacaaccaatgcgaggctctggatcacaaattaat 212  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  45109726 cagacaaccaatgggaggctctggatcacaacttaat 45109690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 24633865 - 24633788
Alignment:
Q  177 agacaaccaatgcgaggctctggatcacaaattaataggtatgagtgaccaaagaaatgctcattaaatcaacaaatc 254  Q
    |||||||||||| || |||||| ||||||| ||||| ||  ||||| |||||||||| | ||||||| |||| |||||    
T  24633865 agacaaccaatgagaagctctgaatcacaacttaatgggcttgagttaccaaagaaaggatcattaagtcaataaatc 24633788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 34220068 - 34220017
Alignment:
Q  387 atttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaa 439  Q
    |||||||||| ||||| || | ||||||||||||||||| |||||||||||||    
T  34220068 atttcattgagcaacttacctattgtaattaacttgtgt-ttacatacgtgaa 34220017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 441
Target Start/End: Original strand, 17472049 - 17472101
Alignment:
Q  388 tttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaata 441  Q
    ||||| ||| || ||||| ||||||||||||||||||| |||||||||||||||    
T  17472049 tttcactgagcagctcacctgttgtaattaacttgtgt-ttacatacgtgaata 17472101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 23459354 - 23459299
Alignment:
Q  385 acatttcattgaacaactcacatgttgtaattaacttgtgtattacatacgtgaata 441  Q
    |||||||| | | |||||||| | ||||||||||||||||| |||||||||||||||    
T  23459354 acatttcactcagcaactcacctattgtaattaacttgtgt-ttacatacgtgaata 23459299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University