View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_60 (Length: 240)
Name: NF15401_low_60
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 39904763 - 39904550
Alignment:
| Q |
9 |
gaagaatataatatgttaccagcggctaagacaaggaagagcatgaacaaaatgccgagtgttttcctctccatgaccaaaatcaatagagtgtgagtgt |
108 |
Q |
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| T |
39904763 |
gaagaatataatatgttaccagcggctaagacaaggaagagcatgaacaaaatgccgagtgttttcctctccatgaccaaaatcaatagagtgtgagtgt |
39904664 |
T |
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| Q |
109 |
ggtagtggtttaatcagaaaagtgaattgtataaatatggctcttatatatgatgttcttatatataatgaattgcatggaaacatacatatatgacgtg |
208 |
Q |
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| T |
39904663 |
ggtagtggtttaatcagaaaagtgaattgtataaatatggctcttatatgtgatgttcttatatataatgaattgcatggaaacatacatatatgacgtg |
39904564 |
T |
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| Q |
209 |
ttggagccgcagat |
222 |
Q |
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| T |
39904563 |
ttggagccgcagat |
39904550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 39900154 - 39900096
Alignment:
| Q |
25 |
taccagcggctaagacaaggaagagcatgaacaaaatgccgagtgttttcctctccatg |
83 |
Q |
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||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |
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| T |
39900154 |
taccagcggctaagagaaggaagagcatgaacaaaaaccagagtgttttcctctccatg |
39900096 |
T |
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