View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_61 (Length: 238)
Name: NF15401_low_61
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_61 |
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| [»] scaffold1333 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 6241296 - 6241498
Alignment:
| Q |
27 |
taacaatgtaggactaccctaatattagccatgtatatatgtgtaaactcaaatggtggaatataagtcaaacggtgcaatatcttatttccttgtctac |
126 |
Q |
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| T |
6241296 |
taacaatgtaggactaccctaatattagccatgtatatatgtgtaaactcaaatggtggaatacaagtcaaacggtgcaatatcttatttccttgtctac |
6241395 |
T |
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| Q |
127 |
atcttagagactc------atttttattacatataaaagatgacgcgcttttgcggtttaatacgtttgaaacccttctatagaacaaagttatcttgta |
220 |
Q |
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| T |
6241396 |
atcttagagactcatttttatttttattacatat-aaagatgacgcgcttttgcggtttaatacgtttgaaacccttctattgaacaaagttatcttgta |
6241494 |
T |
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| Q |
221 |
agtg |
224 |
Q |
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|||| |
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| T |
6241495 |
agtg |
6241498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 6212369 - 6212571
Alignment:
| Q |
27 |
taacaatgtaggactaccctaatattagccatgtatatatgtgtaaactcaaatggtggaatata----agtcaaacggtgcaatatcttatttccttgt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6212369 |
taacaatgtaggactaccctaatattagccatgtatatatgtgtaa-ctcaaatggtggaatatatataagtcaaacggtgcaatatcttatttccttgt |
6212467 |
T |
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| Q |
123 |
ctacat--cttagagactcatttttattacatataaaagatgacgcgcttttgcggtttaatacgtttgaaacccttctatagaacaaagttatcttgta |
220 |
Q |
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| T |
6212468 |
ctacatatcttagagactcatttttattacatataaaagatgacgcgcttttgcggtttaatacgttttaaacccttctatagaacaaagttatcttgta |
6212567 |
T |
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| Q |
221 |
agtg |
224 |
Q |
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|||| |
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| T |
6212568 |
agtg |
6212571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1333 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold1333
Description:
Target: scaffold1333; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 94 - 148
Alignment:
| Q |
23 |
tgtttaacaatgtaggactaccctaatattagccatgtatatatgtgtaaactca |
77 |
Q |
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|||||||||||||| |||| || |||||||||||||||| | |||||||||||| |
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| T |
94 |
tgtttaacaatgtaaaactagccaaatattagccatgtatgtgtgtgtaaactca |
148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1333; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 201 - 250
Alignment:
| Q |
150 |
catataaaagatgacgcgcttttgcggtttaatacgtttgaaacccttct |
199 |
Q |
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||||||||||||||| ||||||| ||||||||||||| |||||| |||| |
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| T |
201 |
catataaaagatgacatgcttttggggtttaatacgttcgaaaccattct |
250 |
T |
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