View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_65 (Length: 229)
Name: NF15401_low_65
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 39790625 - 39790412
Alignment:
| Q |
21 |
taggtgaatttgacggaatcagatgtgccacattaactttgacaaaaataataaaacaaaatctaacatgtcgttatgattttgtcaaattcgtcatcat |
120 |
Q |
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| T |
39790625 |
taggtgaatttgacggaatcatatgtgctacattaactttgacaaaaataataaaacaaaatctaacatgtcgttatgattttgtcaaattcgtcatcat |
39790526 |
T |
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| Q |
121 |
tccaaattcacaagannnnnnnataagcctaatatagctact-------------------taggctagtgtggtccagtaatgtaaagtaaaactacct |
201 |
Q |
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| T |
39790525 |
tccaaattcacaaga---ttttataagcct-atatagctactggataacacttgtgtaacttaggctagtgtggtccagtaatgtaaagtaaaactacct |
39790430 |
T |
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| Q |
202 |
gtaagaacttgatgatgt |
219 |
Q |
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|||||||||||||||||| |
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| T |
39790429 |
gtaagaacttgatgatgt |
39790412 |
T |
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