View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_66 (Length: 227)
Name: NF15401_low_66
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 13632442 - 13632227
Alignment:
| Q |
6 |
aaaatgttgggttgtgttttacttat--gtggtagagttgtggagtggttcgtaagtttgaagtatgctaacatattgggtt----------agaatcgc |
93 |
Q |
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| T |
13632442 |
aaaatgttgggttgtgttttacttatatgtggtagagttgtggagtggtttgtaagtttgaagtatgctaacatattgggttttacgtagttagaatcgc |
13632343 |
T |
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| Q |
94 |
atgttcattctcaagtgctctccaaagaaaggtttaagtggcaatcctcctggtgtgtgaggaaggttcgtaaacacgtaaaagtcatagttacatatga |
193 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13632342 |
atgttcattctcaagcgctctccaaagaaaggtttaagtggcaatcctcctggtgtgtgaggaaggttcgtaaacacgtaaaagtcatagttacatatga |
13632243 |
T |
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| Q |
194 |
aattattatttttatt |
209 |
Q |
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|||||||||| ||||| |
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| T |
13632242 |
aattattattattatt |
13632227 |
T |
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