View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15401_low_7 (Length: 646)
Name: NF15401_low_7
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 12 - 630
Target Start/End: Complemental strand, 53005502 - 53004883
Alignment:
| Q |
12 |
atgaacaagaataaacactctcttcatgtgatttatcttttgaaggaataaagtaggaaattttccactaagaggtattcatatacacattcttccatat |
111 |
Q |
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| T |
53005502 |
atgaacaagaataaacactctcttcatgtgatttatcttttgaaggaataaagtaggaaattttccactaagaggtattcatatacacattcttccatat |
53005403 |
T |
|
| Q |
112 |
ctaacatgtttctacnnnnnnn-aaaagaatatattatatttctactaattagacagcgagacattggcataaaaaatatattacattagcttatatgag |
210 |
Q |
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| T |
53005402 |
ctaacatgtttctacttttttttaaaagaatatattatatttctactaattagacagcgagacattggcataaaagatatattacattagcttatataag |
53005303 |
T |
|
| Q |
211 |
aatacatgtatatttttcttcnnnnnnntaaaagagaatacatgtatatttatacattaattatgaacgaagtaattaattcnnnnnnncagtcnnnnnn |
310 |
Q |
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| T |
53005302 |
aatacatgtatatttttcttcaaaaaaataaaagagaatacatgtatatttatacattaattatgaacgaagtaattaattctttttttcagtaaaaaaa |
53005203 |
T |
|
| Q |
311 |
n-gggattaatattatttatttactaaatgaacgaagtaatcaattaagacctaacaagtaacaatgataatttctagttttattttcttaagaacaaac |
409 |
Q |
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| T |
53005202 |
aagggattaatat-atttttttactaaatgaacgaagtaatcaattaagacctaacaagtaacaacgataatttctagttttattttcttaagaacaaac |
53005104 |
T |
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| Q |
410 |
actttattgttttaaaagtattaaatcctaaaggactcatgtcttgacactctcagttgtccatctatatttgttttatctgaaaagtccaaacgagctt |
509 |
Q |
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| T |
53005103 |
actttattgttttataagtattaaatcctaaaggactcatgtcttgacactctcagttgtccatctatatttgttttatctgaaaagtccaaacgagctt |
53005004 |
T |
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| Q |
510 |
taactaaatatattttaatttcacgttttagttaaaagtttcgtaaaatttcaaattgagcgtgtcagccaaacactacgtgaatttatgcatgtattca |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53005003 |
taactaaatatattttaatttcacgttttagttaaaagtttcgtaaaatttcaaattgagcgtgtcagccaaacactacgtgaatttatccatgtattca |
53004904 |
T |
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| Q |
610 |
gttaggtatagatacacttct |
630 |
Q |
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| T |
53004903 |
gttaggtatagatacacttct |
53004883 |
T |
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