View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15401_low_9 (Length: 594)
Name: NF15401_low_9
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15401_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 19 - 582
Target Start/End: Original strand, 44248056 - 44248619
Alignment:
| Q |
19 |
tttgtacattctttggaacccttttagcaaatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaactttgttatatcaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44248056 |
tttgtacattctttggaacccttttagcaaatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaactttgttatatcaag |
44248155 |
T |
|
| Q |
119 |
cacctccaaatttaatccaatttgttgagcttttactttagcattttcagcttcctctatctcaatacttcttatcttagcatccattccttcaagtttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44248156 |
cacctccaaatttaatccaatttgttgagcttttactttagcattttcagcttcctctatctcaatacttcttatcttagcatccattccttcaagtttc |
44248255 |
T |
|
| Q |
219 |
ttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44248256 |
ttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaa |
44248355 |
T |
|
| Q |
319 |
ttccattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44248356 |
ttccattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaa |
44248455 |
T |
|
| Q |
419 |
tttaaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcaag |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44248456 |
tttaaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcgag |
44248555 |
T |
|
| Q |
519 |
tcaatttgatctatatccccagcccacatctgatttacttgatctaaatatattgtattatatt |
582 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44248556 |
tcaatttgatctatatccctagcccacatctgatttacttgatctaaatatattgtattatatt |
44248619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 582
Target Start/End: Complemental strand, 15284504 - 15283941
Alignment:
| Q |
19 |
tttgtacattctttggaacccttttagcaaatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaactttgttatatcaag |
118 |
Q |
| |
|
||||||||| |||||||| | || |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
15284504 |
tttgtacatattttggaactccatttgcaaatggaaaaggattcatataagcaccagcatgaccatctggtctcaacaatgccaattttgttatatcaag |
15284405 |
T |
|
| Q |
119 |
cacctccaaatttaatccaatttgttgagcttttactttagcattttcagcttcctctatctcaatacttcttatcttagcatccattccttcaagtttc |
218 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||| | |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15284404 |
cacctctaaatttaatccaaattgtttagcttttgccctagcattttccacttcctctatctcaacacttcttatcttagcatccattccttcaagtttc |
15284305 |
T |
|
| Q |
219 |
ttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaa |
318 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15284304 |
ttctcctcatttccatatggctctctctttgaacaagtaccacccttatcccaaccaccttcaaaatgagtaggtgagtatgttctcacaatcacatcaa |
15284205 |
T |
|
| Q |
319 |
ttccattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaa |
418 |
Q |
| |
|
|| ||||||| | || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
15284204 |
ttttattccctttaaccattttcctctcaattatgctattaagggtagtccttaaagcctttctcattggaatataaaatccaatatcactataattaaa |
15284105 |
T |
|
| Q |
419 |
tttaaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcaag |
518 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
15284104 |
tttaaattcttgacatctaaaacaacctataactgaatcaccttcatagtaaattgaaggaatgtccaaaaaccaatgaccaaatgacaaaacaatcaag |
15284005 |
T |
|
| Q |
519 |
tcaatttgatctatatccccagcccacatctgatttacttgatctaaatatattgtattatatt |
582 |
Q |
| |
|
|| |||| ||| ||||||| |||||||| | |||||| ||||| ||||||||||||||||||| |
|
|
| T |
15284004 |
tccattttatccatatcccttgcccacatttcatttacatgatccaaatatattgtattatatt |
15283941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 19 - 418
Target Start/End: Original strand, 15287411 - 15287813
Alignment:
| Q |
19 |
tttgtacattctttggaacccttttagcaaatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaactttgttatatcaag |
118 |
Q |
| |
|
||||||||| |||||||| | || |||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| || |||| ||| | |
|
|
| T |
15287411 |
tttgtacatattttggaactccatttgcaaatggaaaaggattcatgtaaggacctggatgaccatctggtctcaataatgccaatttagttacatccaa |
15287510 |
T |
|
| Q |
119 |
cacctccaaatttaatcc-----aatttgttgagcttttactttagcattttcagcttcctctatctcaatacttcttatcttagcatccattccttcaa |
213 |
Q |
| |
|
|||||| || | |||| | ||||| || ||||||| || ||| |||| |||| ||||||||||| ||||| |||| | ||||||||||| ||| |
|
|
| T |
15287511 |
cacctc-aattctaataccttcaaatttatt-agcttttgtcttggcactttccacttcttctatctcaatccttctaatctcaccatccattcctccaa |
15287608 |
T |
|
| Q |
214 |
gtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattac |
313 |
Q |
| |
|
| |||||||||| || |||| |||| | |||||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||| | ||||| || |
|
|
| T |
15287609 |
ctatcttctcctcttttctataaggcttagtctttgaacaagtaccagccttatcccaatcaccttcaaaatgagcaggtgaaaatgttttaacaatcac |
15287708 |
T |
|
| Q |
314 |
atcaattccattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataa |
413 |
Q |
| |
|
||| |||| ||| ||| | ||| |||| |||||||||| ||||||||||||||||| ||||||||||| | |||||||||||| |||| | ||||| | |
|
|
| T |
15287709 |
atctattctatttcctttagcaactttcctctcaattatactattaagggtagtcctcaaagcctttcttaatggaacataaaaatcaatttgagtatga |
15287808 |
T |
|
| Q |
414 |
ttaaa |
418 |
Q |
| |
|
||||| |
|
|
| T |
15287809 |
ttaaa |
15287813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 244 - 417
Target Start/End: Complemental strand, 15262787 - 15262614
Alignment:
| Q |
244 |
tctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttctt |
343 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| |||||||||| |||||| | ||| |||||||||| |||||||||||| | | ||| |||| | |
|
|
| T |
15262787 |
tctttgaacatgttccagccttatcccaatcaccatcaaaatgagaaggtgaaaaagttttcacaattactccaattccattccttttagcaactttcct |
15262688 |
T |
|
| Q |
344 |
ctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaa |
417 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| | |||||| ||||| || |||||||| ||||||| |
|
|
| T |
15262687 |
ctcaattatgccattaagacaagtccttaaagcctttcttaatggaacgtaaaaaccgatatcagtgtaattaa |
15262614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 169 - 382
Target Start/End: Original strand, 15265418 - 15265631
Alignment:
| Q |
169 |
cttcctctatctcaatacttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatc |
268 |
Q |
| |
|
|||| ||||||||||| |||| |||| | ||||||||||||||| ||||||||| |||| |||| |||| | | |||| ||| | |||| ||||||| |
|
|
| T |
15265418 |
cttcttctatctcaatctttctcatctcaccatccattccttcaactttcttctctccatttctataaggcttagtttttggacaagcaccagccttatc |
15265517 |
T |
|
| Q |
269 |
ccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattt--tcttc--tcaattatgctattaagggt |
364 |
Q |
| |
|
|||| |||||||||||||| || | ||||| | |||||||||| |||| |||| ||| | |||| ||||| |||||||||||||||||||| |
|
|
| T |
15265518 |
ccaagcaccttcaaaatgatgtggcgtaaatgttgtaacaattacattaatttcattaccttt----atttcctcttctatcaattatgctattaagggt |
15265613 |
T |
|
| Q |
365 |
agtccttaaagcctttct |
382 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15265614 |
agtccttaaagcctttct |
15265631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 15256766 - 15256839
Alignment:
| Q |
45 |
gcaaatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaactttgttatatcaag |
118 |
Q |
| |
|
|||||||||||||| | |||||||| |||| |||||||||||||||||| |||||||| || |||| |||||| |
|
|
| T |
15256766 |
gcaaatggaaaagggtacatataaggacctggatgaccatctggtctcaacaatgccaatttagttacatcaag |
15256839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 15262983 - 15262931
Alignment:
| Q |
51 |
ggaaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaa |
103 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
15262983 |
ggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaa |
15262931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 15265294 - 15265357
Alignment:
| Q |
48 |
aatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaactttgtta |
111 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||| || || ||||| ||||||| |
|
|
| T |
15265294 |
aatggaaaaggattcatataaggacctggatgaccatctggtcttaacaaagccaattttgtta |
15265357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 417
Target Start/End: Original strand, 15257069 - 15257141
Alignment:
| Q |
345 |
tcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaa |
417 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||| | | ||||||| ||||| ||||||| ||||| |
|
|
| T |
15257069 |
tcaattatactattaagagtagttcttaaagcctttctcaatacatcataaaacccaatttcagtatgattaa |
15257141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 302; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 19 - 580
Target Start/End: Original strand, 11806974 - 11807535
Alignment:
| Q |
19 |
tttgtacattctttggaacccttttagcaaatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaactttgttatatcaag |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
11806974 |
tttgtacattctttggaattgttttagcaaatggaaaaggatacctataagctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaag |
11807073 |
T |
|
| Q |
119 |
cacctccaaatttaatccaatttgttgagcttttactttagcattttcagcttcctctatctcaatacttcttatcttagcatccattccttcaagtttc |
218 |
Q |
| |
|
||||| |||||||||||||| ||||| || |||| | |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11807074 |
caccttcaaatttaatccaacttgtttagatttttccttagcattttcagcttcctctatctccatacttcttatcttagcttccattccttcaagtttc |
11807173 |
T |
|
| Q |
219 |
ttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaa |
318 |
Q |
| |
|
|||||||||| |||||||| | |||||||||| ||||| |||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
11807174 |
ttctcctcatatttatatggatttttctttgaacaagtacctcccttatcccaagaaccttcaaaatgagtaggtgaaaatgttctcacaatcacatcaa |
11807273 |
T |
|
| Q |
319 |
ttccattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaa |
418 |
Q |
| |
|
|| |||||||| | || |||||| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| || | |
|
|
| T |
11807274 |
tttcattccctttaaccattttcctctcaattatggtattaagggcaatccttaaagcctttctcattggaacataaaatccaatatcattatatttcga |
11807373 |
T |
|
| Q |
419 |
tttaaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcaag |
518 |
Q |
| |
|
||| || ||||||||| || |||||||||||| |||| || ||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
11807374 |
ttttaaatcatgacatatagaacaacctataactgaatcattctcatagtaaactgaaggaatgtccaaaaaccaatgaccaaatgacaacataatcaag |
11807473 |
T |
|
| Q |
519 |
tcaatttgatctatatccccagcccacatctgatttacttgatctaaatatattgtattata |
580 |
Q |
| |
|
|| ||||||||||||||| ||||| ||| | |||| ||||| |||| |||||||||||| |
|
|
| T |
11807474 |
tccatttgatctatatcctttgcccaattctcacttacatgatccaaatgtattgtattata |
11807535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 580
Target Start/End: Complemental strand, 51383689 - 51383131
Alignment:
| Q |
19 |
tttgtacattctttggaacccttttagcaaatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaactttgttatatcaag |
118 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
51383689 |
tttgtacatactttggaattccattagcaaatggaaaaggattcatgtaggctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaag |
51383590 |
T |
|
| Q |
119 |
cacctccaaatttaatccaatttgttgagcttttactttagcattttcagcttcctctatctcaatacttcttatcttagcatccattccttcaagtttc |
218 |
Q |
| |
|
|||||||||||| ||||| | ||||| ||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
51383589 |
cacctccaaattaaatcccaattgttcagcttttgacttagcatttttcacttcctctatctcaatacttcttatctcagcatccatttcttcaagtttc |
51383490 |
T |
|
| Q |
219 |
ttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaa |
318 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||||| || || |||||||||||| ||||||||||||||| ||||| ||||||||||||| |||| | |
|
|
| T |
51383489 |
ttctccccattttcatatggctcactctttgaacaagttcctcccttatcccaaccaccttcaaaatgagatggtgaaaatgttctcacaatcacataat |
51383390 |
T |
|
| Q |
319 |
ttccattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaa |
418 |
Q |
| |
|
||||||||||| | |||| |||| | |||||||| |||||||| ||||||||||||||||||||||| | |||||||| ||||||||| ||||| ||||| |
|
|
| T |
51383389 |
ttccattccctttaacaactttcctttcaattatactattaagagtagtccttaaagcctttctcatcgcaacataaattccaatatcggtatagttaaa |
51383290 |
T |
|
| Q |
419 |
tttaaattcatgacatctaaaacaacctataattgaaccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcaag |
518 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |
|
|
| T |
51383289 |
tttaagatcatgacatttaaaacaacctataatagactcaccctcatagtaaattgaaggaa---ccataaaccaatgaccaaatgataacacaatcaag |
51383193 |
T |
|
| Q |
519 |
tcaatttgatctatatccccagcccacatctgatttacttgatctaaatatattgtattata |
580 |
Q |
| |
|
|| |||||||||||||| | ||||||| ||| ||| || ||||| ||||| ||||||||||| |
|
|
| T |
51383192 |
tccatttgatctatatctctagcccacctctcattgacatgatccaaatacattgtattata |
51383131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University