View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15402_high_12 (Length: 384)
Name: NF15402_high_12
Description: NF15402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15402_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 35 - 365
Target Start/End: Original strand, 31541544 - 31541866
Alignment:
| Q |
35 |
aaaaattcatgtaaattgtaannnnnnnngaaggaatgtaaattgtaattgtaatatgaatagaggtggatcatggaccaatatatatatnnnnnnnnnn |
134 |
Q |
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| T |
31541544 |
aaaaattcatgtaaattgtaattttttttgaaggaatgtaaattgcaattgtaatatgaatagaggtggatcatggaccaatatatatataaaaaaa--- |
31541640 |
T |
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| Q |
135 |
nnnnnngatgatcttaaattaattattaacgaggttgaaccc-ttttcaagctactgttcccattagcactattgttaacacttaacagagtataccatc |
233 |
Q |
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| T |
31541641 |
------gatgatcttaaattaattattaacgaggttgaaccccttttcaagccactgttcccattagcattattgttaacacttaacagagtataccatc |
31541734 |
T |
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| Q |
234 |
aactattataggctgtaaagagagagcaacaatataatgcgatcaaagatcacttaatttgattacttttcccatcaaatttttcatgaaaaatctaaga |
333 |
Q |
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| T |
31541735 |
aactattataggctgtaaagagagaacaacaatataatgcgatcaaagatcacttaatttgattgcttttcccatcaaatttttcatgaaaaatctaaga |
31541834 |
T |
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| Q |
334 |
gnnnnnnnccatcattcacacgtgatgatgtc |
365 |
Q |
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| T |
31541835 |
gagaaaaaccatcattcacacgtgttgatgtc |
31541866 |
T |
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