View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15402_high_13 (Length: 378)
Name: NF15402_high_13
Description: NF15402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15402_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 60 - 284
Target Start/End: Complemental strand, 52512657 - 52512429
Alignment:
| Q |
60 |
ctctattcttcatatctcaatggattgcaatttgcaggcgtctgttattcctcgatgccttcctccaacttccatcaaacaaacaggaaggacgcgttgt |
159 |
Q |
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| T |
52512657 |
ctctattcttcatatctcaatggattgcaatttgcaggcgtctgttattcctcgatgccttcctccaacttccatcaaacaaacaggaaggacgcgttgt |
52512558 |
T |
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| Q |
160 |
tttattgttaaatccactcttcctcaaaatcaaggatatcattcttcctccaaggtatgtatgtatgtttatatacgagtttcaattcaatttcaattac |
259 |
Q |
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| T |
52512557 |
tttattgttaaatccactcttcctcaaaatcaaggatatcattcttcctccaaggtatgtatgtatgtttatatatgagtttcaattcaatttcaattac |
52512458 |
T |
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| Q |
260 |
tcactca----ctcatcattaacttaatt |
284 |
Q |
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| T |
52512457 |
tcactcactcactcatcattaacttaatt |
52512429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 37804648 - 37804540
Alignment:
| Q |
270 |
atcattaacttaattcaataccgttagtaaaccgagagcctcaccaatatcaactttcataagaggttcaatccattctgtttcagcaagaacaaagcgc |
369 |
Q |
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| T |
37804648 |
atcattaacttaattcaataccgttagtaaaccgagagcctcaccaatatcaactttcataagaggttcaatccattctgtttcagcaagaacaaagcgc |
37804549 |
T |
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| Q |
370 |
ccttgttcg |
378 |
Q |
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| T |
37804548 |
ccttgttcg |
37804540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 46232105 - 46232052
Alignment:
| Q |
310 |
tcaccaatatcaactttcataagaggttcaatccattctgtttcagcaagaaca |
363 |
Q |
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| T |
46232105 |
tcaccaatatcaacttccataagagggtcaatccattctgttttagcaggaaca |
46232052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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