View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15402_high_14 (Length: 371)
Name: NF15402_high_14
Description: NF15402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15402_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 30 - 344
Target Start/End: Complemental strand, 38527219 - 38526905
Alignment:
| Q |
30 |
atactgttcttattcaagatgccatgggtgagaaggtatgaaaattagtaagattttggagtaaaaagttggttttaatttaatttacttaatttgaagg |
129 |
Q |
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| T |
38527219 |
atactgttcttattcaagatgccatgggtgagaaggtatgaaaattagtaagattttggagtaaaaagttggtttgaatttaatttacttaatttgaagg |
38527120 |
T |
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| Q |
130 |
tttaattttgtgtttgaaaaaacaggttgggaagtttctgcagctaatagcaacatttattgggggttttgtgatagcatttacaaaagggtggcttctt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38527119 |
tttaattttgtgtttgaaaaaacaggttgggaagtttctgcagctaatagcaacatttattgggggttttgtgatagcatttacaaaagggtggcttctt |
38527020 |
T |
|
| Q |
230 |
actgttgttatgatgtcaacacttccacttcttgttgtgtcaggtgctgccatggctgttatcataggcagaatggcttctaaaggtcaaactgcttatg |
329 |
Q |
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| T |
38527019 |
actgttgttatgatgtcaacacttccatttcttgttgtgtcaggtgctgccatggctgttatcataggcagaatggcttctaaaggtcaaactgcttatg |
38526920 |
T |
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| Q |
330 |
caaaagctgcacatg |
344 |
Q |
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| T |
38526919 |
caaaagctgcacatg |
38526905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 124 - 344
Target Start/End: Complemental strand, 38568266 - 38568046
Alignment:
| Q |
124 |
tgaaggtttaattttgtgtttgaaaaaacaggttgggaagtttctgcagctaatagcaacatttattgggggttttgtgatagcatttacaaaagggtgg |
223 |
Q |
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||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| | ||| ||| |
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| T |
38568266 |
tgaaggtttcattttatgtttgaaaaaacaggttgggaaatttctgcagctaatagcaacatttgttggcggttttgtgatagcatttaccagaggatgg |
38568167 |
T |
|
| Q |
224 |
cttcttactgttgttatgatgtcaacacttccacttcttgttgtgtcaggtgctgccatggctgttatcataggcagaatggcttctaaaggtcaaactg |
323 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
38568166 |
cttcttactgttgtattgatgtcaacacttccacttcttgttgtgtcgggtgctgccatggctgtaatcataggcaggatggcttctaaaggtcaaactg |
38568067 |
T |
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| Q |
324 |
cttatgcaaaagctgcacatg |
344 |
Q |
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|||||||||||||||| |||| |
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| T |
38568066 |
cttatgcaaaagctgcgcatg |
38568046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 38568520 - 38568479
Alignment:
| Q |
30 |
atactgttcttattcaagatgccatgggtgagaaggtatgaa |
71 |
Q |
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| T |
38568520 |
atactgttcttattcaagatgccatgggtgagaaggtatgaa |
38568479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 51198075 - 51198113
Alignment:
| Q |
30 |
atactgttcttattcaagatgccatgggtgagaaggtat |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
51198075 |
atactgttcttattcaagatgccatgggtgagaaggtat |
51198113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 51144420 - 51144458
Alignment:
| Q |
30 |
atactgttcttattcaagatgccatgggtgagaaggtat |
68 |
Q |
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|||||||||||||| | |||||||||||||||||||||| |
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| T |
51144420 |
atactgttcttattaaggatgccatgggtgagaaggtat |
51144458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 29938521 - 29938485
Alignment:
| Q |
32 |
actgttcttattcaagatgccatgggtgagaaggtat |
68 |
Q |
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|||||||||||| ||||||||||||| |||||||||| |
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| T |
29938521 |
actgttcttattaaagatgccatgggggagaaggtat |
29938485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 49738568 - 49738535
Alignment:
| Q |
35 |
gttcttattcaagatgccatgggtgagaaggtat |
68 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
49738568 |
gttcttattcaagatgccatgggagagaaggtat |
49738535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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