View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15402_high_15 (Length: 367)
Name: NF15402_high_15
Description: NF15402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15402_high_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 43377204 - 43377570
Alignment:
| Q |
1 |
ttacaaagagcagttcaaaattggaacaatcatcaaaaacacaaatttgtgataaatttaggagatattgttgatgggttttgtccaaaagaccaatctt |
100 |
Q |
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| T |
43377204 |
ttacaaagagcagttcaaaattggaacaatcatcaaaaacacaaatttgtgataaatttaggagatattgttgatgggttttgtccaaaagaccaatctt |
43377303 |
T |
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| Q |
101 |
ttaacactgtaaaaaagattgttgatgaattcgacaaattcgatggacaagtatatcatttaattggaaatcactgtctatacaatctacctcgcgaaaa |
200 |
Q |
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| T |
43377304 |
ttaacactgtaaaaaagattgtcgatgaatttgacaaattcgatggacaagtatatcatttaattggaaatcactgtctatacaatctacctcgcgaaaa |
43377403 |
T |
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| Q |
201 |
gttacttccgttgttgaagattcataaccttgaaggttatgcttactacgaattttctcccgtcccggaatatagatttgtagttcttgatggatatgat |
300 |
Q |
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| T |
43377404 |
gttacttccgttgttgaagattcatagccttgaaggttatgcttactacgaattttctcccgtcccggaatatagatttgtagttcttgatggatatgat |
43377503 |
T |
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| Q |
301 |
ataagtgcaattggttggccaaaagatcatcataaaacatcagaggcaatgaaatttctcaaagaga |
367 |
Q |
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| T |
43377504 |
ataagtgcaattggttggccaaaagatcatcataaaacatcggaggcaatgaaatttctcaaagaga |
43377570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 46 - 320
Target Start/End: Original strand, 34428238 - 34428512
Alignment:
| Q |
46 |
tttgtgataaatttaggagatattgttgatgggttttgtccaaaagaccaatcttttaacactgtaaaaaagattgttgatgaattcgacaaattcgatg |
145 |
Q |
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| T |
34428238 |
tttgtgattaatttaggagatattgttgatgggttttgtcccaaagatcaatctattaatgctgtaaagaaagttgtggatgaatttgaaatgttcaggg |
34428337 |
T |
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| Q |
146 |
gacaagtatatcatttaattggaaatcactgtctatacaatctacctcgcgaaaagttacttccgttgttgaagattcataaccttgaaggttatgctta |
245 |
Q |
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||| || ||| || | ||||| ||||||||||| |||||||| ||||| | |||||||| || || ||||| | | |||||| |||| |||||| |
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| T |
34428338 |
gacctgtgtataatatgattggcaatcactgtctttacaatcttcctcgaagcacattacttccattattaaagatcccaacccttgatggttgtgctta |
34428437 |
T |
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| Q |
246 |
ctacgaattttctcccgtcccggaatatagatttgtagttcttgatggatatgatataagtgcaattggttggcc |
320 |
Q |
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| T |
34428438 |
ctatgacttctcaccagtgccagaatatagatttgtagttctggatagctatgacatcagtgccattggttggcc |
34428512 |
T |
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