View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15402_high_17 (Length: 358)
Name: NF15402_high_17
Description: NF15402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15402_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 53491608 - 53491937
Alignment:
| Q |
1 |
atcgctccaatctgttaaaaaagcggacgaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatactctagacattaaaagcttaca |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491608 |
atcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatactctagacattaaaagcttaca |
53491707 |
T |
|
| Q |
101 |
gttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttttgtctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491708 |
gttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttttgtctca |
53491807 |
T |
|
| Q |
201 |
aacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaatactcattacagatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491808 |
aacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaatactcattacagatg |
53491907 |
T |
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| Q |
301 |
ccaaagatgcatatattaaggcagattcct |
330 |
Q |
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| T |
53491908 |
ccaaagatgcatatattaaggcagattcct |
53491937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 268
Target Start/End: Original strand, 53499204 - 53499468
Alignment:
| Q |
4 |
gctccaatctgttaaaaaagcggacgaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatactctagacattaaaagcttacagtt |
103 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499204 |
gctccaatctgttaaataagcggactaaaatataaatgcaatcgtacataaaaggagttcttccattcatgtatactctagacattaaaagcttacagtt |
53499303 |
T |
|
| Q |
104 |
cgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttttgtctcaaac |
203 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
53499304 |
cgagtagaatagccccatgagttctgccaaaccattgctttctctcccttcttatcttcaaattttacctcgaacttttcagcaaacttttgtcccaagc |
53499403 |
T |
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| Q |
204 |
aatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
268 |
Q |
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| T |
53499404 |
aatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaactgaaca |
53499468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 82 - 268
Target Start/End: Original strand, 16070390 - 16070576
Alignment:
| Q |
82 |
tagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttt |
181 |
Q |
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|||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||| ||||| |||||||||| |||| ||| ||||| |
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| T |
16070390 |
tagacattgaaagcttacagttcgagtagaaaacccccatgagttctgccaaaccattgttttctctaccttcttatcttcaaagtttatctcaaacttc |
16070489 |
T |
|
| Q |
182 |
tcagcaaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
268 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||| |
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| T |
16070490 |
tcagcaaacttttgtcccaaacaatgggtagctgcaccttgtatcccacgaccaatgtttggaataaaagcctagaaaaattgaaca |
16070576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 53499888 - 53499936
Alignment:
| Q |
282 |
caaatactcattacagatgccaaagatgcatatattaaggcagattcct |
330 |
Q |
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|||| ||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
53499888 |
caaagactcattacagatgccaaaaatgcatatagtaaggcagattcct |
53499936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 91 - 259
Target Start/End: Complemental strand, 45355076 - 45354908
Alignment:
| Q |
91 |
aaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaac |
190 |
Q |
| |
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||||||||||||||||||| |||| |||| || |||||||| ||||||||||||||||||||| || |||| | |||| ||| ||| ||| |||||| |
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| T |
45355076 |
aaagcttacagttcgagtactataggcccacgagttctgccagaccattgctttctctcccttctcattttcatagtttatctcaaacattttagcaaaa |
45354977 |
T |
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| Q |
191 |
ttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaa |
259 |
Q |
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||||||| ||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
45354976 |
ttttgtcccaaacaatgagaagttgcaccttgtataccacgaccagtgtttggaataaatgcctaggaa |
45354908 |
T |
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