View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15402_high_18 (Length: 358)
Name: NF15402_high_18
Description: NF15402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15402_high_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 2 - 358
Target Start/End: Original strand, 40803985 - 40804340
Alignment:
| Q |
2 |
tcaactctcacttcagcatattgatttgaggcacacatcctaccatcctcgttttaactttgcatttatggtaacggtgaagacatcaatatttaatnnn |
101 |
Q |
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| T |
40803985 |
tcaactctcacttcagcatattgatttgaggcacacatcctaccatcctcgttttaactttgcatttatggtaacggtgaatacatcaatatttaataaa |
40804084 |
T |
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| Q |
102 |
nnnnnnntgtagtaaaaatattaccattatctttctttagcaaacttcaagtatttagcaatttcagaccatctcatatggtcttgatataacatgaaat |
201 |
Q |
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| T |
40804085 |
aaaaaa-tgtagtaaaaatattaccattatctttctttagcaaacttcaagtatttagcaatttcagaccatctcatatggtcttgatataacatgaaat |
40804183 |
T |
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| Q |
202 |
gatggtttccaaaacgttatttgtgagtttgattttgaagggatccaatttctcatagcctaatttctttgctgcttgttttatttattttccattgaca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40804184 |
gatggtttccaaaacgttatttgtgagtttgattttgaagggatccaatttctcatagcctaatttctttgctgcttgttttatttattttccattgaca |
40804283 |
T |
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| Q |
302 |
taaaatccatcgacataaaatttgaacatgcatgcatgtctggattcacattaagaa |
358 |
Q |
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| T |
40804284 |
taaaatccatcgacataaaatttgaacatgcatgcatgtctggattcacattaagaa |
40804340 |
T |
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