View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15402_high_1_N (Length: 501)

Name: NF15402_high_1_N
Description: NF15402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15402_high_1_N
NF15402_high_1_N
[»] chr6 (11 HSPs)
chr6 (1-488)||(370776-371273)
chr6 (230-452)||(1459578-1459800)
chr6 (234-452)||(1470960-1471178)
chr6 (234-356)||(7564884-7565006)
chr6 (297-354)||(1442234-1442291)
chr6 (448-482)||(176354-176388)
chr6 (340-421)||(1453908-1453989)
chr6 (340-421)||(1465600-1465681)
chr6 (448-482)||(1442105-1442139)
chr6 (295-355)||(9819957-9820017)
chr6 (295-355)||(9825637-9825697)
[»] chr7 (2 HSPs)
chr7 (234-364)||(3926855-3926985)
chr7 (448-481)||(3927079-3927112)
[»] chr4 (2 HSPs)
chr4 (234-367)||(55419578-55419711)
chr4 (448-480)||(55419802-55419834)
[»] chr3 (4 HSPs)
chr3 (449-482)||(2442060-2442093)
chr3 (449-487)||(4142126-4142164)
chr3 (449-482)||(4157941-4157974)
chr3 (452-488)||(989420-989456)
[»] chr2 (3 HSPs)
chr2 (449-482)||(6538855-6538888)
chr2 (449-481)||(7160752-7160784)
chr2 (449-481)||(7168688-7168720)
[»] chr1 (2 HSPs)
chr1 (294-355)||(25478730-25478791)
chr1 (294-355)||(25869303-25869364)
[»] chr5 (2 HSPs)
chr5 (449-488)||(23766853-23766892)
chr5 (449-488)||(23816701-23816740)


Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 371273 - 370776
Alignment:
Q  1 tcaagatattgcaacctttggaaaatctaccttatagttcatttgatgttgtatacagtatcgggtatgattatttcaccgatagttataaggtagttgc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  371273 tcaagatattgccacctttggaaaatctaccttatagttcatttgatgttgtatacagtatcgggtatgattatttcaccgatagttataaggtagttgc 371174  T
Q  101 catttcgttcaaacaaatcgataattcttgcgaaactgaagttagggttcttactttaggtaccaactcttggagtacgattccatgcttaccttctcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  371173 catttcgttcaaacaaatcgataattcttgcgaaactgaagttagggttcttactttaggtaccaactcttggagtacgattccatgcttaccttctcaa 371074  T
Q  201 ctactcatgggtgaactcgaagtttctctaggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattc 300  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  371073 ctactcatgggtgaactcgaagtttctccaggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggtcattc 370974  T
Q  301 tttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctaggga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  370973 tttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctaggga 370874  T
Q  401 ttgctaatgcatccttgctcagactaaaacttttacgggcatttgggt----------tatggaaataaagattcttggactaaattgttcaatattt 488  Q
    ||||| ||||||||||||||||||||||||||||| |||| |||||||          ||||||||||||||||||||||||||||||||||||||||    
T  370873 ttgcttatgcatccttgctcagactaaaacttttatgggcgtttgggttatgaagaattatggaaataaagattcttggactaaattgttcaatattt 370776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 230 - 452
Target Start/End: Complemental strand, 1459800 - 1459578
Alignment:
Q  230 aggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattat 329  Q
    |||||||||||||||||| |||||||||||||||||||| |||  | ||||  ||  |||| ||| |||||||||||||||||||| ||| |||| ||||    
T  1459800 aggaaaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttat 1459701  T
Q  330 caagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctcagactaaaa 429  Q
    |||||||||| ||||||| |||||||| ||||||||||||||| | | ||   ||||| ||||| |||||||| || |||| |||||||||| || |||     
T  1459700 caagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcatacaaaat 1459601  T
Q  430 cttttacgggcatttgggttatg 452  Q
    |||||  ||  ||||||||||||    
T  1459600 cttttttggatatttgggttatg 1459578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 234 - 452
Target Start/End: Complemental strand, 1471178 - 1470960
Alignment:
Q  234 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 333  Q
    ||||||||| |||| ||||||||||||||| |||||||| || ||||  ||  |||| ||| ||||||||||||| |||||| ||| |||| ||||||||    
T  1471178 aaatttgtatgtggtaccattaattgggtcgtactagatcaagagaatgactcttcacgggtcattctttctcttaatttaggaaacgagtcttatcaag 1471079  T
Q  334 agatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctcagactaaaacttt 433  Q
    ||||||  ||||||||||||| | ||||||||||||||| | | ||   ||||| |||||||||||||| || ||||||||||||||| || ||| ||||    
T  1471078 agattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttctagggattacttatgcatccttgctcataccaaatcttt 1470979  T
Q  434 tacgggcatttgggttatg 452  Q
    |  ||  ||||||||||||    
T  1470978 tttggatatttgggttatg 1470960  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 356
Target Start/End: Complemental strand, 7565006 - 7564884
Alignment:
Q  234 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 333  Q
    ||||||||||||||  ||||| |||||||||||  |||| || | ||  ||  |||||||| ||||||||| ||||||||||  || |||| ||||||||    
T  7565006 aaatttgtaagtggcgccattcattgggtcataaaagatcaagataatgactcttcatgggtcattctttcccttgatttaggtaacgagtcttatcaag 7564907  T
Q  334 agatttcgcagcctgattatggt 356  Q
    |||||| |||||| |||||||||    
T  7564906 agattttgcagccagattatggt 7564884  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 1442291 - 1442234
Alignment:
Q  297 attctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatg 354  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |  |||||||||||    
T  1442291 attctctctcttgatttagaaaaagagtcttatcaagagattttgttgcctgattatg 1442234  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 482
Target Start/End: Original strand, 176354 - 176388
Alignment:
Q  448 ttatggaaataaagattcttggactaaattgttca 482  Q
    |||||||||||||||||||||||||||||||||||    
T  176354 ttatggaaataaagattcttggactaaattgttca 176388  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 1453989 - 1453908
Alignment:
Q  340 cgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctca 421  Q
    ||||||| |||| |||||||||||| ||||||| ||| ||   |||||  || ||||||||||||| |||||||||||||||    
T  1453989 cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctca 1453908  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 1465681 - 1465600
Alignment:
Q  340 cgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctca 421  Q
    ||||||| |||| |||||||||||| ||||||| ||| ||   |||||  || ||||||||||||| |||||||||||||||    
T  1465681 cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctca 1465600  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 448 - 482
Target Start/End: Complemental strand, 1442139 - 1442105
Alignment:
Q  448 ttatggaaataaagattcttggactaaattgttca 482  Q
    |||||||| ||||||||||||||||||||||||||    
T  1442139 ttatggaattaaagattcttggactaaattgttca 1442105  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 9820017 - 9819957
Alignment:
Q  295 ccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 355  Q
    ||||| ||||||||||||| |  | |||||  ||||||||||||| |||||||||||||||    
T  9820017 ccattgtttctcttgatttggggagagagtcctatcaagagattttgcagcctgattatgg 9819957  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 9825697 - 9825637
Alignment:
Q  295 ccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 355  Q
    ||||| ||||||||||||| |  | |||||  ||||||||||||| |||||||||||||||    
T  9825697 ccattgtttctcttgatttggggacagagtcctatcaagagattttgcagcctgattatgg 9825637  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 234 - 364
Target Start/End: Original strand, 3926855 - 3926985
Alignment:
Q  234 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 333  Q
    |||||||||||||| || |||||||||| ||||  | || |||||||| |  ||||||||| |||||||||||||||||||| ||| ||||  |||||||    
T  3926855 aaatttgtaagtggcacaattaattgggccatagaaaatcaaaagaactatgattcatgggtcattctttctcttgatttaggaaacgagtcctatcaag 3926954  T
Q  334 agatttcgcagcctgattatggtctagatga 364  Q
    ||||||| | ||| |||| |||||| |||||    
T  3926955 agatttcacggcccgattttggtcttgatga 3926985  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 481
Target Start/End: Original strand, 3927079 - 3927112
Alignment:
Q  448 ttatggaaataaagattcttggactaaattgttc 481  Q
    ||||||||||||| ||||||||||||||||||||    
T  3927079 ttatggaaataaaaattcttggactaaattgttc 3927112  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 367
Target Start/End: Original strand, 55419578 - 55419711
Alignment:
Q  234 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 333  Q
    |||||||||||||| ||||||||||||| ||||  |||| || ||||  || ||  ||||| |||||||||||| ||||||| ||| |||| ||||||||    
T  55419578 aaatttgtaagtggcaccattaattgggccatagaagatcaagagaaatactatctatgggtcattctttctctggatttaggaaatgagtcttatcaag 55419677  T
Q  334 agatttcgcagcctgattatggtctagatgaacc 367  Q
     |||| |||| || || |||||||||||||||||    
T  55419678 tgattccgcatcccgagtatggtctagatgaacc 55419711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 480
Target Start/End: Original strand, 55419802 - 55419834
Alignment:
Q  448 ttatggaaataaagattcttggactaaattgtt 480  Q
    |||||||||||||||||||||||||||||||||    
T  55419802 ttatggaaataaagattcttggactaaattgtt 55419834  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 449 - 482
Target Start/End: Original strand, 2442060 - 2442093
Alignment:
Q  449 tatggaaataaagattcttggactaaattgttca 482  Q
    ||||||||||||||||||||||||||||||||||    
T  2442060 tatggaaataaagattcttggactaaattgttca 2442093  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 4142164 - 4142126
Alignment:
Q  449 tatggaaataaagattcttggactaaattgttcaatatt 487  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  4142164 tatggaaataaagagtcttggactaaattgttcactatt 4142126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Complemental strand, 4157974 - 4157941
Alignment:
Q  449 tatggaaataaagattcttggactaaattgttca 482  Q
    |||||||||||||| |||||||||||||||||||    
T  4157974 tatggaaataaagagtcttggactaaattgttca 4157941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 488
Target Start/End: Original strand, 989420 - 989456
Alignment:
Q  452 ggaaataaagattcttggactaaattgttcaatattt 488  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  989420 ggaaataaagagtcttggactaaattgttcactattt 989456  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 449 - 482
Target Start/End: Original strand, 6538855 - 6538888
Alignment:
Q  449 tatggaaataaagattcttggactaaattgttca 482  Q
    ||||||||||||||||||||||||||||||||||    
T  6538855 tatggaaataaagattcttggactaaattgttca 6538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 481
Target Start/End: Complemental strand, 7160784 - 7160752
Alignment:
Q  449 tatggaaataaagattcttggactaaattgttc 481  Q
    ||||||||||| |||||||||||||||||||||    
T  7160784 tatggaaataatgattcttggactaaattgttc 7160752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 481
Target Start/End: Complemental strand, 7168720 - 7168688
Alignment:
Q  449 tatggaaataaagattcttggactaaattgttc 481  Q
    ||||||||||| |||||||||||||||||||||    
T  7168720 tatggaaataacgattcttggactaaattgttc 7168688  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 25478730 - 25478791
Alignment:
Q  294 gccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 355  Q
    |||||| |||||||| |||| |  ||||||| ||||||||||||||| ||||||||||||||    
T  25478730 gccattgtttctcttcatttggggaaagagtcttatcaagagatttcacagcctgattatgg 25478791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 25869364 - 25869303
Alignment:
Q  294 gccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 355  Q
    |||||| |||||||| |||| | ||||||||  |||||||| ||||| ||||||||||||||    
T  25869364 gccattgtttctcttcatttgggaaaagagtcctatcaagacatttcacagcctgattatgg 25869303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 488
Target Start/End: Complemental strand, 23766892 - 23766853
Alignment:
Q  449 tatggaaataaagattcttggactaaattgttcaatattt 488  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  23766892 tatggaaataaagagtcttggactaaattgttcactattt 23766853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 488
Target Start/End: Complemental strand, 23816740 - 23816701
Alignment:
Q  449 tatggaaataaagattcttggactaaattgttcaatattt 488  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  23816740 tatggaaataaagagtcttggactaaattgttcactattt 23816701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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